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Cluster: Rep_1353_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1353_c_0 Rep_1353_c_0_173 156986 157996 - 3.A.1.2.3
TC Rep_1353_c_0 Rep_1353_c_0_174 158013 159509 - 3.A.1.2.3
TC Rep_1353_c_0 Rep_1353_c_0_175 159571 160554 - 3.A.1.2.3
pfam Rep_1353_c_0 Rep_1353_c_0_176 160825 161595 - S-methyl_trans | S-methyl_trans
pfam Rep_1353_c_0 Rep_1353_c_0_177 161635 162618 - DNA_processg_A
TC Rep_1353_c_0 Rep_1353_c_0_178 162939 164261 + 9.A.5.1.1
pfam Rep_1353_c_0 Rep_1353_c_0_179 164305 165630 - MatE | MatE
CAZyme Rep_1353_c_0 Rep_1353_c_0_180 165780 166529 + GH73
TC Rep_1353_c_0 Rep_1353_c_0_181 166559 167788 - 2.A.4.7.5
TC Rep_1353_c_0 Rep_1353_c_0_182 167868 169043 - 2.A.23.2.2
Gene ID: Rep_1353_c_0_173
Type: TC
Location: 156986 - 157996 (-)
Gene ID: Rep_1353_c_0_174
Type: TC
Location: 158013 - 159509 (-)
Gene ID: Rep_1353_c_0_175
Type: TC
Location: 159571 - 160554 (-)
Gene ID: Rep_1353_c_0_176
Type: pfam
Location: 160825 - 161595 (-)
Gene ID: Rep_1353_c_0_177
Type: pfam
Location: 161635 - 162618 (-)
Gene ID: Rep_1353_c_0_178
Type: TC
Location: 162939 - 164261 (+)
Gene ID: Rep_1353_c_0_179
Type: pfam
Location: 164305 - 165630 (-)
Gene ID: Rep_1353_c_0_180
Type: CAZyme
Location: 165780 - 166529 (+)
Gene ID: Rep_1353_c_0_181
Type: TC
Location: 166559 - 167788 (-)
Gene ID: Rep_1353_c_0_182
Type: TC
Location: 167868 - 169043 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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