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Cluster: Rep_1352_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1352_c_12 Rep_1352_c_12_6 4144 4800 + 5.A.1.2.7
pfam Rep_1352_c_12 Rep_1352_c_12_7 4818 6302 + AhpC-TSA | PMSR | SelR | Redoxin
TC Rep_1352_c_12 Rep_1352_c_12_8 6944 7654 + 3.A.1.3.15
TC Rep_1352_c_12 Rep_1352_c_12_9 7647 8375 + 3.A.1.3.15
TC Rep_1352_c_12 Rep_1352_c_12_10 8405 9133 + 3.A.1.3.15
CAZyme Rep_1352_c_12 Rep_1352_c_12_11 9143 11122 + GH13_11
pfam Rep_1352_c_12 Rep_1352_c_12_12 11188 13125 - FBPase_2
TC Rep_1352_c_12 Rep_1352_c_12_13 13350 14303 - 8.A.7.1.5
Gene ID: Rep_1352_c_12_6
Type: TC
Location: 4144 - 4800 (+)
Gene ID: Rep_1352_c_12_7
Type: pfam
Location: 4818 - 6302 (+)
Gene ID: Rep_1352_c_12_8
Type: TC
Location: 6944 - 7654 (+)
Gene ID: Rep_1352_c_12_9
Type: TC
Location: 7647 - 8375 (+)
Gene ID: Rep_1352_c_12_10
Type: TC
Location: 8405 - 9133 (+)
Gene ID: Rep_1352_c_12_11
Type: CAZyme
Location: 9143 - 11122 (+)
Gene ID: Rep_1352_c_12_12
Type: pfam
Location: 11188 - 13125 (-)
Gene ID: Rep_1352_c_12_13
Type: TC
Location: 13350 - 14303 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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