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Cluster: Rep_1351_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1351_c_48 Rep_1351_c_48_49 51867 52223 + 1.E.14.1.3
TC Rep_1351_c_48 Rep_1351_c_48_50 52223 52915 + 2.A.122.1.7
TC Rep_1351_c_48 Rep_1351_c_48_51 52924 53532 + 9.B.158.1.1
TC Rep_1351_c_48 Rep_1351_c_48_52 53735 55273 + 2.A.68.1.2
pfam Rep_1351_c_48 Rep_1351_c_48_53 55381 55884 - Flavodoxin_1
STP Rep_1351_c_48 Rep_1351_c_48_54 56064 56633 + TetR_N
TC Rep_1351_c_48 Rep_1351_c_48_55 56697 59711 + 2.A.6.3.6
pfam Rep_1351_c_48 Rep_1351_c_48_56 59898 61205 + UPF0004 | TRAM | Radical_SAM
TC Rep_1351_c_48 Rep_1351_c_48_57 61234 62475 + 3.A.6.2.1
CAZyme Rep_1351_c_48 Rep_1351_c_48_58 62527 63624 + CBM50 | CBM50
Gene ID: Rep_1351_c_48_49
Type: TC
Location: 51867 - 52223 (+)
Gene ID: Rep_1351_c_48_50
Type: TC
Location: 52223 - 52915 (+)
Gene ID: Rep_1351_c_48_51
Type: TC
Location: 52924 - 53532 (+)
Gene ID: Rep_1351_c_48_52
Type: TC
Location: 53735 - 55273 (+)
Gene ID: Rep_1351_c_48_53
Type: pfam
Location: 55381 - 55884 (-)
Gene ID: Rep_1351_c_48_54
Type: STP
Location: 56064 - 56633 (+)
Gene ID: Rep_1351_c_48_55
Type: TC
Location: 56697 - 59711 (+)
Gene ID: Rep_1351_c_48_56
Type: pfam
Location: 59898 - 61205 (+)
Gene ID: Rep_1351_c_48_57
Type: TC
Location: 61234 - 62475 (+)
Gene ID: Rep_1351_c_48_58
Type: CAZyme
Location: 62527 - 63624 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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