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Cluster: Rep_1351_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1351_c_11 Rep_1351_c_11_26 24459 25433 - 3.A.1.5.15
TC Rep_1351_c_11 Rep_1351_c_11_27 25426 26433 - 3.A.1.5.20
TC Rep_1351_c_11 Rep_1351_c_11_28 26452 27321 - 3.A.1.5.39
TC Rep_1351_c_11 Rep_1351_c_11_29 27331 28257 - 3.A.1.5.11
TC Rep_1351_c_11 Rep_1351_c_11_30 28347 29873 - 3.A.1.5.27
pfam Rep_1351_c_11 Rep_1351_c_11_31 30056 30919 - EamA | EamA | Sugar_transport
pfam Rep_1351_c_11 Rep_1351_c_11_32 30922 31905 - SMI1_KNR4 | SUKH_6
CAZyme Rep_1351_c_11 Rep_1351_c_11_33 31982 33784 - CE4
Gene ID: Rep_1351_c_11_26
Type: TC
Location: 24459 - 25433 (-)
Gene ID: Rep_1351_c_11_27
Type: TC
Location: 25426 - 26433 (-)
Gene ID: Rep_1351_c_11_28
Type: TC
Location: 26452 - 27321 (-)
Gene ID: Rep_1351_c_11_29
Type: TC
Location: 27331 - 28257 (-)
Gene ID: Rep_1351_c_11_30
Type: TC
Location: 28347 - 29873 (-)
Gene ID: Rep_1351_c_11_31
Type: pfam
Location: 30056 - 30919 (-)
Gene ID: Rep_1351_c_11_32
Type: pfam
Location: 30922 - 31905 (-)
Gene ID: Rep_1351_c_11_33
Type: CAZyme
Location: 31982 - 33784 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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