Cluster: Rep_1346_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1346
- CGC Family ID: CGCFAM_07525
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1346_c_22 | Rep_1346_c_22_3 | 3739 | 6051 | + | 3.A.11.3.1 |
| TC | Rep_1346_c_22 | Rep_1346_c_22_4 | 6592 | 7329 | + | 1.C.109.1.5 |
| TC | Rep_1346_c_22 | Rep_1346_c_22_5 | 7438 | 8754 | + | 9.B.174.1.1 |
| pfam | Rep_1346_c_22 | Rep_1346_c_22_6 | 8793 | 9491 | + | TP_methylase |
| pfam | Rep_1346_c_22 | Rep_1346_c_22_7 | 9841 | 10716 | + | MMR_HSR1 | FeoB_N |
| CAZyme | Rep_1346_c_22 | Rep_1346_c_22_8 | 10731 | 11987 | + | GT4 |
| CAZyme | Rep_1346_c_22 | Rep_1346_c_22_9 | 12025 | 12924 | + | GT4 |
Gene ID: Rep_1346_c_22_3
Type: TC
Location: 3739 - 6051 (+)
Type: TC
Location: 3739 - 6051 (+)
Gene ID: Rep_1346_c_22_4
Type: TC
Location: 6592 - 7329 (+)
Type: TC
Location: 6592 - 7329 (+)
Gene ID: Rep_1346_c_22_5
Type: TC
Location: 7438 - 8754 (+)
Type: TC
Location: 7438 - 8754 (+)
Gene ID: Rep_1346_c_22_6
Type: pfam
Location: 8793 - 9491 (+)
Type: pfam
Location: 8793 - 9491 (+)
Gene ID: Rep_1346_c_22_7
Type: pfam
Location: 9841 - 10716 (+)
Type: pfam
Location: 9841 - 10716 (+)
Gene ID: Rep_1346_c_22_8
Type: CAZyme
Location: 10731 - 11987 (+)
Type: CAZyme
Location: 10731 - 11987 (+)
Gene ID: Rep_1346_c_22_9
Type: CAZyme
Location: 12025 - 12924 (+)
Type: CAZyme
Location: 12025 - 12924 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Leptotrichiaceae
Genus
Leptotrichia
Species
Leptotrichia wadei_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.