Cluster: Rep_1346_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1346
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1346_c_7 | Rep_1346_c_7_9 | 7918 | 9333 | - | 4.A.1.2.7 |
| CAZyme | Rep_1346_c_7 | Rep_1346_c_7_10 | 9360 | 10466 | - | GH170 |
| TC | Rep_1346_c_7 | Rep_1346_c_7_11 | 10591 | 11934 | - | 4.A.3.2.3 |
| pfam | Rep_1346_c_7 | Rep_1346_c_7_12 | 12033 | 12341 | - | PTS_IIB |
| TC | Rep_1346_c_7 | Rep_1346_c_7_13 | 12360 | 12689 | - | 4.A.3.1.1 |
| CAZyme | Rep_1346_c_7 | Rep_1346_c_7_14 | 12696 | 14057 | - | GH4 |
Gene ID: Rep_1346_c_7_9
Type: TC
Location: 7918 - 9333 (-)
Type: TC
Location: 7918 - 9333 (-)
Gene ID: Rep_1346_c_7_10
Type: CAZyme
Location: 9360 - 10466 (-)
Type: CAZyme
Location: 9360 - 10466 (-)
Gene ID: Rep_1346_c_7_11
Type: TC
Location: 10591 - 11934 (-)
Type: TC
Location: 10591 - 11934 (-)
Gene ID: Rep_1346_c_7_12
Type: pfam
Location: 12033 - 12341 (-)
Type: pfam
Location: 12033 - 12341 (-)
Gene ID: Rep_1346_c_7_13
Type: TC
Location: 12360 - 12689 (-)
Type: TC
Location: 12360 - 12689 (-)
Gene ID: Rep_1346_c_7_14
Type: CAZyme
Location: 12696 - 14057 (-)
Type: CAZyme
Location: 12696 - 14057 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Leptotrichiaceae
Genus
Leptotrichia
Species
Leptotrichia wadei_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.