Cluster: Rep_1346_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1346
- CGC Family ID: CGCFAM_05539
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1346_c_2 | Rep_1346_c_2_3 | 1242 | 2234 | + | 3.A.1.5.32 |
| TC | Rep_1346_c_2 | Rep_1346_c_2_4 | 2268 | 3239 | + | 3.A.1.5.32 |
| TC | Rep_1346_c_2 | Rep_1346_c_2_5 | 3243 | 4205 | + | 3.A.1.5.32 |
| TC | Rep_1346_c_2 | Rep_1346_c_2_6 | 4217 | 5152 | + | 3.A.1.5.10 |
| TC | Rep_1346_c_2 | Rep_1346_c_2_7 | 5179 | 6960 | + | 3.A.1.5.32 |
| CAZyme | Rep_1346_c_2 | Rep_1346_c_2_8 | 7084 | 9564 | + | GT35 |
Gene ID: Rep_1346_c_2_3
Type: TC
Location: 1242 - 2234 (+)
Type: TC
Location: 1242 - 2234 (+)
Gene ID: Rep_1346_c_2_4
Type: TC
Location: 2268 - 3239 (+)
Type: TC
Location: 2268 - 3239 (+)
Gene ID: Rep_1346_c_2_5
Type: TC
Location: 3243 - 4205 (+)
Type: TC
Location: 3243 - 4205 (+)
Gene ID: Rep_1346_c_2_6
Type: TC
Location: 4217 - 5152 (+)
Type: TC
Location: 4217 - 5152 (+)
Gene ID: Rep_1346_c_2_7
Type: TC
Location: 5179 - 6960 (+)
Type: TC
Location: 5179 - 6960 (+)
Gene ID: Rep_1346_c_2_8
Type: CAZyme
Location: 7084 - 9564 (+)
Type: CAZyme
Location: 7084 - 9564 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Leptotrichiaceae
Genus
Leptotrichia
Species
Leptotrichia wadei_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.