Cluster: Rep_1340_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: host glycan/beta-glucan
- Genome ID: Rep_1340
- CGC Family ID: CGCFAM_00012
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1340_c_30 | Rep_1340_c_30_7 | 8361 | 9683 | + | GH4 |
| TC | Rep_1340_c_30 | Rep_1340_c_30_8 | 9931 | 10239 | + | 4.A.3.2.8 |
| TC | Rep_1340_c_30 | Rep_1340_c_30_9 | 10278 | 11594 | + | 4.A.3.2.2 |
| CAZyme | Rep_1340_c_30 | Rep_1340_c_30_10 | 11951 | 13372 | + | GH1 |
| TC | Rep_1340_c_30 | Rep_1340_c_30_11 | 13404 | 13721 | + | 4.A.3.2.8 |
Gene ID: Rep_1340_c_30_7
Type: CAZyme
Location: 8361 - 9683 (+)
Type: CAZyme
Location: 8361 - 9683 (+)
Gene ID: Rep_1340_c_30_8
Type: TC
Location: 9931 - 10239 (+)
Type: TC
Location: 9931 - 10239 (+)
Gene ID: Rep_1340_c_30_9
Type: TC
Location: 10278 - 11594 (+)
Type: TC
Location: 10278 - 11594 (+)
Gene ID: Rep_1340_c_30_10
Type: CAZyme
Location: 11951 - 13372 (+)
Type: CAZyme
Location: 11951 - 13372 (+)
Gene ID: Rep_1340_c_30_11
Type: TC
Location: 13404 - 13721 (+)
Type: TC
Location: 13404 - 13721 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Eubacteriales
Family
Garciellaceae
Genus
Garciella
Species
Garciella sp900555725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.