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Cluster: Rep_1340_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1340_c_7 Rep_1340_c_7_1 1 1425 + AA4
TC Rep_1340_c_7 Rep_1340_c_7_2 1701 3296 + 2.A.14.1.3
pfam Rep_1340_c_7 Rep_1340_c_7_3 3453 4730 + Lar_N | LarA_C
STP Rep_1340_c_7 Rep_1340_c_7_4 4932 6080 + SIS | SIS
TC Rep_1340_c_7 Rep_1340_c_7_5 6295 6768 + 4.A.6.1.4
TC Rep_1340_c_7 Rep_1340_c_7_6 6818 7597 + 4.A.6.1.4
TC Rep_1340_c_7 Rep_1340_c_7_7 7584 8432 + 4.A.6.1.4
TC Rep_1340_c_7 Rep_1340_c_7_8 8495 8923 + 4.A.6.1.16
Gene ID: Rep_1340_c_7_1
Type: CAZyme
Location: 1 - 1425 (+)
Gene ID: Rep_1340_c_7_2
Type: TC
Location: 1701 - 3296 (+)
Gene ID: Rep_1340_c_7_3
Type: pfam
Location: 3453 - 4730 (+)
Gene ID: Rep_1340_c_7_4
Type: STP
Location: 4932 - 6080 (+)
Gene ID: Rep_1340_c_7_5
Type: TC
Location: 6295 - 6768 (+)
Gene ID: Rep_1340_c_7_6
Type: TC
Location: 6818 - 7597 (+)
Gene ID: Rep_1340_c_7_7
Type: TC
Location: 7584 - 8432 (+)
Gene ID: Rep_1340_c_7_8
Type: TC
Location: 8495 - 8923 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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