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Cluster: Rep_1324_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1324_c_26 Rep_1324_c_26_19 18405 19871 + 2.A.114.1.2
TF Rep_1324_c_26 Rep_1324_c_26_20 19994 20641 + 0045030
STP Rep_1324_c_26 Rep_1324_c_26_21 20743 21288 + Hemerythrin
CAZyme Rep_1324_c_26 Rep_1324_c_26_22 21400 22551 + GT4
pfam Rep_1324_c_26 Rep_1324_c_26_23 22535 23158 + VTT_dom
CAZyme Rep_1324_c_26 Rep_1324_c_26_24 23166 24155 + GT4
pfam Rep_1324_c_26 Rep_1324_c_26_25 24292 24615 + SpoVG
pfam Rep_1324_c_26 Rep_1324_c_26_26 24747 25757 + AsnA
TC Rep_1324_c_26 Rep_1324_c_26_27 25866 27200 + 2.A.38.4.3
TC Rep_1324_c_26 Rep_1324_c_26_28 27209 27886 + 2.A.38.4.3
Gene ID: Rep_1324_c_26_19
Type: TC
Location: 18405 - 19871 (+)
Gene ID: Rep_1324_c_26_20
Type: TF
Location: 19994 - 20641 (+)
Gene ID: Rep_1324_c_26_21
Type: STP
Location: 20743 - 21288 (+)
Gene ID: Rep_1324_c_26_22
Type: CAZyme
Location: 21400 - 22551 (+)
Gene ID: Rep_1324_c_26_23
Type: pfam
Location: 22535 - 23158 (+)
Gene ID: Rep_1324_c_26_24
Type: CAZyme
Location: 23166 - 24155 (+)
Gene ID: Rep_1324_c_26_25
Type: pfam
Location: 24292 - 24615 (+)
Gene ID: Rep_1324_c_26_26
Type: pfam
Location: 24747 - 25757 (+)
Gene ID: Rep_1324_c_26_27
Type: TC
Location: 25866 - 27200 (+)
Gene ID: Rep_1324_c_26_28
Type: TC
Location: 27209 - 27886 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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