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Cluster: Rep_1324_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1324_c_24 Rep_1324_c_24_17 18205 19248 + 9.B.141.1.3
pfam Rep_1324_c_24 Rep_1324_c_24_18 19245 20009 + YibE_F
TC Rep_1324_c_24 Rep_1324_c_24_19 20642 21124 - 4.A.1.1.11
TC Rep_1324_c_24 Rep_1324_c_24_20 21135 22637 - 4.A.1.1.14
pfam Rep_1324_c_24 Rep_1324_c_24_21 22630 23337 - Dus | NanE
TF Rep_1324_c_24 Rep_1324_c_24_22 23493 24311 + HTH_6
TC Rep_1324_c_24 Rep_1324_c_24_23 24534 25772 - 2.A.1.47.3
TF Rep_1324_c_24 Rep_1324_c_24_24 25862 26731 + HTH_3
pfam Rep_1324_c_24 Rep_1324_c_24_25 26919 28655 - MucBP | MucBP
CAZyme Rep_1324_c_24 Rep_1324_c_24_26 29703 31163 - GH1
TC Rep_1324_c_24 Rep_1324_c_24_27 31185 33056 - 4.A.1.2.11
Gene ID: Rep_1324_c_24_17
Type: TC
Location: 18205 - 19248 (+)
Gene ID: Rep_1324_c_24_18
Type: pfam
Location: 19245 - 20009 (+)
Gene ID: Rep_1324_c_24_19
Type: TC
Location: 20642 - 21124 (-)
Gene ID: Rep_1324_c_24_20
Type: TC
Location: 21135 - 22637 (-)
Gene ID: Rep_1324_c_24_21
Type: pfam
Location: 22630 - 23337 (-)
Gene ID: Rep_1324_c_24_22
Type: TF
Location: 23493 - 24311 (+)
Gene ID: Rep_1324_c_24_23
Type: TC
Location: 24534 - 25772 (-)
Gene ID: Rep_1324_c_24_24
Type: TF
Location: 25862 - 26731 (+)
Gene ID: Rep_1324_c_24_25
Type: pfam
Location: 26919 - 28655 (-)
Gene ID: Rep_1324_c_24_26
Type: CAZyme
Location: 29703 - 31163 (-)
Gene ID: Rep_1324_c_24_27
Type: TC
Location: 31185 - 33056 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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