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Cluster: Rep_1319_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1319_c_16 Rep_1319_c_16_4 5025 5843 + 3.A.1.124.6
pfam Rep_1319_c_16 Rep_1319_c_16_5 5927 6844 + Mem_trans
TC Rep_1319_c_16 Rep_1319_c_16_6 6908 8194 + 2.A.24.3.2
pfam Rep_1319_c_16 Rep_1319_c_16_7 8324 9496 + malic | Malic_M
peptidase Rep_1319_c_16 Rep_1319_c_16_8 9506 10717 + M20.003
TC Rep_1319_c_16 Rep_1319_c_16_9 10816 12276 + 2.A.3.7.2
pfam Rep_1319_c_16 Rep_1319_c_16_10 12475 13569 + Epimerase_2
CAZyme Rep_1319_c_16 Rep_1319_c_16_11 13569 14786 + GT4
Gene ID: Rep_1319_c_16_4
Type: TC
Location: 5025 - 5843 (+)
Gene ID: Rep_1319_c_16_5
Type: pfam
Location: 5927 - 6844 (+)
Gene ID: Rep_1319_c_16_6
Type: TC
Location: 6908 - 8194 (+)
Gene ID: Rep_1319_c_16_7
Type: pfam
Location: 8324 - 9496 (+)
Gene ID: Rep_1319_c_16_8
Type: peptidase
Location: 9506 - 10717 (+)
Gene ID: Rep_1319_c_16_9
Type: TC
Location: 10816 - 12276 (+)
Gene ID: Rep_1319_c_16_10
Type: pfam
Location: 12475 - 13569 (+)
Gene ID: Rep_1319_c_16_11
Type: CAZyme
Location: 13569 - 14786 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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