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Cluster: Rep_1316_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1316_c_88 Rep_1316_c_88_3 3422 4078 + GH23
TC Rep_1316_c_88 Rep_1316_c_88_4 4144 5463 + 3.D.6.1.2
TC Rep_1316_c_88 Rep_1316_c_88_5 5474 6448 + 3.D.6.1.2
pfam Rep_1316_c_88 Rep_1316_c_88_6 6441 6983 + FMN_bind
TC Rep_1316_c_88 Rep_1316_c_88_7 6992 7654 + 3.D.6.1.2
TC Rep_1316_c_88 Rep_1316_c_88_8 7664 8236 + 3.D.6.1.2
TC Rep_1316_c_88 Rep_1316_c_88_9 8246 9046 + 3.D.6.1.2
pfam Rep_1316_c_88 Rep_1316_c_88_10 9156 9536 + NusG_II
TC Rep_1316_c_88 Rep_1316_c_88_11 9538 10077 + 2.A.87.3.1
pfam Rep_1316_c_88 Rep_1316_c_88_12 10052 10732 + RadC | UPF0758_N
TC Rep_1316_c_88 Rep_1316_c_88_13 10746 11756 + 1.A.33.1.5
Gene ID: Rep_1316_c_88_3
Type: CAZyme
Location: 3422 - 4078 (+)
Gene ID: Rep_1316_c_88_4
Type: TC
Location: 4144 - 5463 (+)
Gene ID: Rep_1316_c_88_5
Type: TC
Location: 5474 - 6448 (+)
Gene ID: Rep_1316_c_88_6
Type: pfam
Location: 6441 - 6983 (+)
Gene ID: Rep_1316_c_88_7
Type: TC
Location: 6992 - 7654 (+)
Gene ID: Rep_1316_c_88_8
Type: TC
Location: 7664 - 8236 (+)
Gene ID: Rep_1316_c_88_9
Type: TC
Location: 8246 - 9046 (+)
Gene ID: Rep_1316_c_88_10
Type: pfam
Location: 9156 - 9536 (+)
Gene ID: Rep_1316_c_88_11
Type: TC
Location: 9538 - 10077 (+)
Gene ID: Rep_1316_c_88_12
Type: pfam
Location: 10052 - 10732 (+)
Gene ID: Rep_1316_c_88_13
Type: TC
Location: 10746 - 11756 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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