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Cluster: Rep_1311_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1311_c_84 Rep_1311_c_84_8 7715 8716 + 4.A.6.1.10
TC Rep_1311_c_84 Rep_1311_c_84_9 8726 9535 + 4.A.6.1.15
TC Rep_1311_c_84 Rep_1311_c_84_10 9544 10473 + 4.A.6.1.6
pfam Rep_1311_c_84 Rep_1311_c_84_11 10473 10841 + DUF956
pfam Rep_1311_c_84 Rep_1311_c_84_12 11221 13281 + GTP_EFTU | EFG_C | MMR_HSR1 | EFG_IV | EFG_III | EF-G_D2
CAZyme Rep_1311_c_84 Rep_1311_c_84_13 13321 15312 + GH13_8
pfam Rep_1311_c_84 Rep_1311_c_84_14 15312 15821 + Lipase_GDSL | Lipase_GDSL_2
TC Rep_1311_c_84 Rep_1311_c_84_15 15823 16698 + 1.A.23.3.1
Gene ID: Rep_1311_c_84_8
Type: TC
Location: 7715 - 8716 (+)
Gene ID: Rep_1311_c_84_9
Type: TC
Location: 8726 - 9535 (+)
Gene ID: Rep_1311_c_84_10
Type: TC
Location: 9544 - 10473 (+)
Gene ID: Rep_1311_c_84_11
Type: pfam
Location: 10473 - 10841 (+)
Gene ID: Rep_1311_c_84_12
Type: pfam
Location: 11221 - 13281 (+)
Gene ID: Rep_1311_c_84_13
Type: CAZyme
Location: 13321 - 15312 (+)
Gene ID: Rep_1311_c_84_14
Type: pfam
Location: 15312 - 15821 (+)
Gene ID: Rep_1311_c_84_15
Type: TC
Location: 15823 - 16698 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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