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Cluster: Rep_1311_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1311_c_19 Rep_1311_c_19_7 6646 7311 - 2.A.38.4.2
TC Rep_1311_c_19 Rep_1311_c_19_8 7321 8679 - 2.A.38.4.1
pfam Rep_1311_c_19 Rep_1311_c_19_9 8865 9365 + LOR | Tubby_C_like
TC Rep_1311_c_19 Rep_1311_c_19_10 9550 12225 + 3.A.3.2.21
TC Rep_1311_c_19 Rep_1311_c_19_11 12539 13099 - 2.A.51.1.6
TC Rep_1311_c_19 Rep_1311_c_19_12 13092 13625 - 2.A.51.1.6
pfam Rep_1311_c_19 Rep_1311_c_19_13 13746 14285 + Acetyltransf_1
pfam Rep_1311_c_19 Rep_1311_c_19_14 14304 14957 + Hydrolase | NIF | HAD_2
TC Rep_1311_c_19 Rep_1311_c_19_15 15025 16386 - 2.A.66.1.13
TC Rep_1311_c_19 Rep_1311_c_19_16 16628 17740 - 3.A.1.1.26
CAZyme Rep_1311_c_19 Rep_1311_c_19_17 17811 19271 - GH77
TF Rep_1311_c_19 Rep_1311_c_19_18 19274 20311 - LacI
TC Rep_1311_c_19 Rep_1311_c_19_19 20316 21152 - 3.A.1.1.45
TC Rep_1311_c_19 Rep_1311_c_19_20 21154 21999 - 3.A.1.1.45
TC Rep_1311_c_19 Rep_1311_c_19_21 22139 23500 - 3.A.1.1.45
Gene ID: Rep_1311_c_19_7
Type: TC
Location: 6646 - 7311 (-)
Gene ID: Rep_1311_c_19_8
Type: TC
Location: 7321 - 8679 (-)
Gene ID: Rep_1311_c_19_9
Type: pfam
Location: 8865 - 9365 (+)
Gene ID: Rep_1311_c_19_10
Type: TC
Location: 9550 - 12225 (+)
Gene ID: Rep_1311_c_19_11
Type: TC
Location: 12539 - 13099 (-)
Gene ID: Rep_1311_c_19_12
Type: TC
Location: 13092 - 13625 (-)
Gene ID: Rep_1311_c_19_13
Type: pfam
Location: 13746 - 14285 (+)
Gene ID: Rep_1311_c_19_14
Type: pfam
Location: 14304 - 14957 (+)
Gene ID: Rep_1311_c_19_15
Type: TC
Location: 15025 - 16386 (-)
Gene ID: Rep_1311_c_19_16
Type: TC
Location: 16628 - 17740 (-)
Gene ID: Rep_1311_c_19_17
Type: CAZyme
Location: 17811 - 19271 (-)
Gene ID: Rep_1311_c_19_18
Type: TF
Location: 19274 - 20311 (-)
Gene ID: Rep_1311_c_19_19
Type: TC
Location: 20316 - 21152 (-)
Gene ID: Rep_1311_c_19_20
Type: TC
Location: 21154 - 21999 (-)
Gene ID: Rep_1311_c_19_21
Type: TC
Location: 22139 - 23500 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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