dbCAN Logo

Cluster: Rep_1311_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1311_c_0 Rep_1311_c_0_2 1460 2590 - GT4
CAZyme Rep_1311_c_0 Rep_1311_c_0_3 2621 3694 - GT4
pfam Rep_1311_c_0 Rep_1311_c_0_4 3717 4865 - Aminotran_1_2 | DegT_DnrJ_EryC1
pfam Rep_1311_c_0 Rep_1311_c_0_5 4866 5372 - Hexapep | Hexapep_2 | Hexapep_2
CAZyme Rep_1311_c_0 Rep_1311_c_0_6 5372 6442 - GH177
pfam Rep_1311_c_0 Rep_1311_c_0_7 6446 7531 - Epimerase_2
pfam Rep_1311_c_0 Rep_1311_c_0_8 7550 8869 - UDPG_MGDP_dh | NAD_binding_2 | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme Rep_1311_c_0 Rep_1311_c_0_9 8856 10145 - GT4
TC Rep_1311_c_0 Rep_1311_c_0_10 10160 10843 - 9.B.18.1.2
STP Rep_1311_c_0 Rep_1311_c_0_11 10843 12066 - Aminotran_1_2
TC Rep_1311_c_0 Rep_1311_c_0_12 12066 14027 - 9.B.18.2.1
TC Rep_1311_c_0 Rep_1311_c_0_13 14005 15558 - 2.A.66.4.7
Gene ID: Rep_1311_c_0_2
Type: CAZyme
Location: 1460 - 2590 (-)
Gene ID: Rep_1311_c_0_3
Type: CAZyme
Location: 2621 - 3694 (-)
Gene ID: Rep_1311_c_0_4
Type: pfam
Location: 3717 - 4865 (-)
Gene ID: Rep_1311_c_0_5
Type: pfam
Location: 4866 - 5372 (-)
Gene ID: Rep_1311_c_0_6
Type: CAZyme
Location: 5372 - 6442 (-)
Gene ID: Rep_1311_c_0_7
Type: pfam
Location: 6446 - 7531 (-)
Gene ID: Rep_1311_c_0_8
Type: pfam
Location: 7550 - 8869 (-)
Gene ID: Rep_1311_c_0_9
Type: CAZyme
Location: 8856 - 10145 (-)
Gene ID: Rep_1311_c_0_10
Type: TC
Location: 10160 - 10843 (-)
Gene ID: Rep_1311_c_0_11
Type: STP
Location: 10843 - 12066 (-)
Gene ID: Rep_1311_c_0_12
Type: TC
Location: 12066 - 14027 (-)
Gene ID: Rep_1311_c_0_13
Type: TC
Location: 14005 - 15558 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List