dbCAN Logo

Cluster: Rep_1310_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1310_c_29 Rep_1310_c_29_10 12238 13329 + 3.A.1.1.26
NULL(UNKNOWN) Rep_1310_c_29 Rep_1310_c_29_11 13329 13970 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1310_c_29 Rep_1310_c_29_12 13982 14983 + 3.A.1.1.10
TC Rep_1310_c_29 Rep_1310_c_29_13 14993 15916 + 3.A.1.1.29
pfam Rep_1310_c_29 Rep_1310_c_29_14 15935 17461 + DUF3502 | SBP_bac_8
CAZyme Rep_1310_c_29 Rep_1310_c_29_15 17602 18897 + GH84
CAZyme Rep_1310_c_29 Rep_1310_c_29_16 18894 21515 + GH38
CAZyme Rep_1310_c_29 Rep_1310_c_29_17 21515 22795 + GH125
TF Rep_1310_c_29 Rep_1310_c_29_18 22788 23519 - HTH_6
pfam Rep_1310_c_29 Rep_1310_c_29_19 23560 24429 + ROK
CAZyme Rep_1310_c_29 Rep_1310_c_29_20 24426 25799 + GH1
Gene ID: Rep_1310_c_29_10
Type: TC
Location: 12238 - 13329 (+)
Gene ID: Rep_1310_c_29_11
Type:
Location: 13329 - 13970 (+)
Gene ID: Rep_1310_c_29_12
Type: TC
Location: 13982 - 14983 (+)
Gene ID: Rep_1310_c_29_13
Type: TC
Location: 14993 - 15916 (+)
Gene ID: Rep_1310_c_29_14
Type: pfam
Location: 15935 - 17461 (+)
Gene ID: Rep_1310_c_29_15
Type: CAZyme
Location: 17602 - 18897 (+)
Gene ID: Rep_1310_c_29_16
Type: CAZyme
Location: 18894 - 21515 (+)
Gene ID: Rep_1310_c_29_17
Type: CAZyme
Location: 21515 - 22795 (+)
Gene ID: Rep_1310_c_29_18
Type: TF
Location: 22788 - 23519 (-)
Gene ID: Rep_1310_c_29_19
Type: pfam
Location: 23560 - 24429 (+)
Gene ID: Rep_1310_c_29_20
Type: CAZyme
Location: 24426 - 25799 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List