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Cluster: Rep_1309_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1309_c_2 Rep_1309_c_2_67 70219 70755 + 2.A.51.1.6
TC Rep_1309_c_2 Rep_1309_c_2_68 70748 71308 + 2.A.51.1.6
TC Rep_1309_c_2 Rep_1309_c_2_69 71365 71691 - 4.A.3.2.8
CAZyme Rep_1309_c_2 Rep_1309_c_2_70 71702 72787 - GH170
TC Rep_1309_c_2 Rep_1309_c_2_71 72787 74121 - 4.A.3.2.2
pfam Rep_1309_c_2 Rep_1309_c_2_72 74126 74458 - PTS_IIA
TF Rep_1309_c_2 Rep_1309_c_2_73 74476 76452 - HTH_11 | Mga
TC Rep_1309_c_2 Rep_1309_c_2_74 76656 76979 + 4.A.3.1.1
TC Rep_1309_c_2 Rep_1309_c_2_75 77100 79775 - 3.A.3.2.21
NULL(UNKNOWN) Rep_1309_c_2 Rep_1309_c_2_76 79969 80322 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1309_c_2 Rep_1309_c_2_77 81233 82396 + GT4
CAZyme Rep_1309_c_2 Rep_1309_c_2_78 82365 83378 + GT4
Gene ID: Rep_1309_c_2_67
Type: TC
Location: 70219 - 70755 (+)
Gene ID: Rep_1309_c_2_68
Type: TC
Location: 70748 - 71308 (+)
Gene ID: Rep_1309_c_2_69
Type: TC
Location: 71365 - 71691 (-)
Gene ID: Rep_1309_c_2_70
Type: CAZyme
Location: 71702 - 72787 (-)
Gene ID: Rep_1309_c_2_71
Type: TC
Location: 72787 - 74121 (-)
Gene ID: Rep_1309_c_2_72
Type: pfam
Location: 74126 - 74458 (-)
Gene ID: Rep_1309_c_2_73
Type: TF
Location: 74476 - 76452 (-)
Gene ID: Rep_1309_c_2_74
Type: TC
Location: 76656 - 76979 (+)
Gene ID: Rep_1309_c_2_75
Type: TC
Location: 77100 - 79775 (-)
Gene ID: Rep_1309_c_2_76
Type:
Location: 79969 - 80322 (-)
Gene ID: Rep_1309_c_2_77
Type: CAZyme
Location: 81233 - 82396 (+)
Gene ID: Rep_1309_c_2_78
Type: CAZyme
Location: 82365 - 83378 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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