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Cluster: Rep_1309_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1309_c_41 Rep_1309_c_41_3 3035 4099 + 4.A.6.1.15
TC Rep_1309_c_41 Rep_1309_c_41_4 4109 4924 + 4.A.6.1.15
TC Rep_1309_c_41 Rep_1309_c_41_5 4934 5866 + 4.A.6.1.15
pfam Rep_1309_c_41 Rep_1309_c_41_6 5868 6224 + DUF956
pfam Rep_1309_c_41 Rep_1309_c_41_7 6375 8435 + GTP_EFTU | EFG_C | MMR_HSR1 | GTP_EFTU_D2 | EFG_IV | EFG_III | EF-G_D2
CAZyme Rep_1309_c_41 Rep_1309_c_41_8 8452 10443 + GH13_8
pfam Rep_1309_c_41 Rep_1309_c_41_9 10443 10949 + Lipase_GDSL | Lipase_GDSL_2
TC Rep_1309_c_41 Rep_1309_c_41_10 10950 11825 + 1.A.23.3.1
Gene ID: Rep_1309_c_41_3
Type: TC
Location: 3035 - 4099 (+)
Gene ID: Rep_1309_c_41_4
Type: TC
Location: 4109 - 4924 (+)
Gene ID: Rep_1309_c_41_5
Type: TC
Location: 4934 - 5866 (+)
Gene ID: Rep_1309_c_41_6
Type: pfam
Location: 5868 - 6224 (+)
Gene ID: Rep_1309_c_41_7
Type: pfam
Location: 6375 - 8435 (+)
Gene ID: Rep_1309_c_41_8
Type: CAZyme
Location: 8452 - 10443 (+)
Gene ID: Rep_1309_c_41_9
Type: pfam
Location: 10443 - 10949 (+)
Gene ID: Rep_1309_c_41_10
Type: TC
Location: 10950 - 11825 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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