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Cluster: Rep_1309_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1309_c_14 Rep_1309_c_14_1 115 1695 + 3.A.1.135.5
TF Rep_1309_c_14 Rep_1309_c_14_2 1761 2435 + Trans_reg_C
STP Rep_1309_c_14 Rep_1309_c_14_3 2413 3363 + HATPase_c
TC Rep_1309_c_14 Rep_1309_c_14_4 3444 4202 + 3.A.1.134.10
TC Rep_1309_c_14 Rep_1309_c_14_5 4189 6111 + 3.A.1.134.10
TC Rep_1309_c_14 Rep_1309_c_14_6 6205 7536 + 2.A.66.1.7
pfam Rep_1309_c_14 Rep_1309_c_14_7 7939 8613 + DUF6873
pfam Rep_1309_c_14 Rep_1309_c_14_8 8689 9975 + HGTP_anticodon | tRNA-synt_His
CAZyme Rep_1309_c_14 Rep_1309_c_14_9 10054 11478 - AA7
Gene ID: Rep_1309_c_14_1
Type: TC
Location: 115 - 1695 (+)
Gene ID: Rep_1309_c_14_2
Type: TF
Location: 1761 - 2435 (+)
Gene ID: Rep_1309_c_14_3
Type: STP
Location: 2413 - 3363 (+)
Gene ID: Rep_1309_c_14_4
Type: TC
Location: 3444 - 4202 (+)
Gene ID: Rep_1309_c_14_5
Type: TC
Location: 4189 - 6111 (+)
Gene ID: Rep_1309_c_14_6
Type: TC
Location: 6205 - 7536 (+)
Gene ID: Rep_1309_c_14_7
Type: pfam
Location: 7939 - 8613 (+)
Gene ID: Rep_1309_c_14_8
Type: pfam
Location: 8689 - 9975 (+)
Gene ID: Rep_1309_c_14_9
Type: CAZyme
Location: 10054 - 11478 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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