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Cluster: Rep_1309_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1309_c_1 Rep_1309_c_1_32 31224 32738 - GH77
TF Rep_1309_c_1 Rep_1309_c_1_33 32741 33775 - LacI
NULL(UNKNOWN) Rep_1309_c_1 Rep_1309_c_1_34 34328 35200 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1309_c_1 Rep_1309_c_1_35 35320 36672 - 9.A.40.2.2
TC Rep_1309_c_1 Rep_1309_c_1_36 36742 37692 - 1.A.35.3.2
TC Rep_1309_c_1 Rep_1309_c_1_37 37765 39363 - 2.A.35.2.1
TC Rep_1309_c_1 Rep_1309_c_1_38 39805 40443 - 3.A.2.2.2
TC Rep_1309_c_1 Rep_1309_c_1_39 40447 41814 - 3.A.2.2.2
TC Rep_1309_c_1 Rep_1309_c_1_40 41819 43576 - 3.A.2.2.2
TC Rep_1309_c_1 Rep_1309_c_1_41 43588 43899 - 3.A.2.2.2
pfam Rep_1309_c_1 Rep_1309_c_1_42 43892 44926 - vATP-synt_AC39
pfam Rep_1309_c_1 Rep_1309_c_1_43 44923 45486 - vATP-synt_E
TC Rep_1309_c_1 Rep_1309_c_1_44 45502 45969 - 3.A.2.2.2
TC Rep_1309_c_1 Rep_1309_c_1_45 45969 47891 - 3.A.2.2.2
Gene ID: Rep_1309_c_1_32
Type: CAZyme
Location: 31224 - 32738 (-)
Gene ID: Rep_1309_c_1_33
Type: TF
Location: 32741 - 33775 (-)
Gene ID: Rep_1309_c_1_34
Type:
Location: 34328 - 35200 (+)
Gene ID: Rep_1309_c_1_35
Type: TC
Location: 35320 - 36672 (-)
Gene ID: Rep_1309_c_1_36
Type: TC
Location: 36742 - 37692 (-)
Gene ID: Rep_1309_c_1_37
Type: TC
Location: 37765 - 39363 (-)
Gene ID: Rep_1309_c_1_38
Type: TC
Location: 39805 - 40443 (-)
Gene ID: Rep_1309_c_1_39
Type: TC
Location: 40447 - 41814 (-)
Gene ID: Rep_1309_c_1_40
Type: TC
Location: 41819 - 43576 (-)
Gene ID: Rep_1309_c_1_41
Type: TC
Location: 43588 - 43899 (-)
Gene ID: Rep_1309_c_1_42
Type: pfam
Location: 43892 - 44926 (-)
Gene ID: Rep_1309_c_1_43
Type: pfam
Location: 44923 - 45486 (-)
Gene ID: Rep_1309_c_1_44
Type: TC
Location: 45502 - 45969 (-)
Gene ID: Rep_1309_c_1_45
Type: TC
Location: 45969 - 47891 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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