Cluster: Rep_1308_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1308
- CGC Family ID: CGCFAM_01793
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1308_c_160 | Rep_1308_c_160_1 | 1 | 768 | + | 4.A.6.1.15 |
| TC | Rep_1308_c_160 | Rep_1308_c_160_2 | 778 | 1710 | + | 4.A.6.1.15 |
| pfam | Rep_1308_c_160 | Rep_1308_c_160_3 | 1712 | 2068 | + | DUF956 |
| pfam | Rep_1308_c_160 | Rep_1308_c_160_4 | 2219 | 4279 | + | GTP_EFTU | EFG_C | MMR_HSR1 | GTP_EFTU_D2 | EFG_IV | EFG_III | EF-G_D2 |
| CAZyme | Rep_1308_c_160 | Rep_1308_c_160_5 | 4296 | 6287 | + | GH13_8 |
| pfam | Rep_1308_c_160 | Rep_1308_c_160_6 | 6287 | 6793 | + | Lipase_GDSL | Lipase_GDSL_2 |
| TC | Rep_1308_c_160 | Rep_1308_c_160_7 | 6794 | 7669 | + | 1.A.23.3.1 |
Gene ID: Rep_1308_c_160_1
Type: TC
Location: 1 - 768 (+)
Type: TC
Location: 1 - 768 (+)
Gene ID: Rep_1308_c_160_2
Type: TC
Location: 778 - 1710 (+)
Type: TC
Location: 778 - 1710 (+)
Gene ID: Rep_1308_c_160_3
Type: pfam
Location: 1712 - 2068 (+)
Type: pfam
Location: 1712 - 2068 (+)
Gene ID: Rep_1308_c_160_4
Type: pfam
Location: 2219 - 4279 (+)
Type: pfam
Location: 2219 - 4279 (+)
Gene ID: Rep_1308_c_160_5
Type: CAZyme
Location: 4296 - 6287 (+)
Type: CAZyme
Location: 4296 - 6287 (+)
Gene ID: Rep_1308_c_160_6
Type: pfam
Location: 6287 - 6793 (+)
Type: pfam
Location: 6287 - 6793 (+)
Gene ID: Rep_1308_c_160_7
Type: TC
Location: 6794 - 7669 (+)
Type: TC
Location: 6794 - 7669 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Tissierellales
Family
Peptoniphilaceae
Genus
Anaerococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.