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Cluster: Rep_1289_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1289_c_1 Rep_1289_c_1_98 107456 108544 - GT28
TC Rep_1289_c_1 Rep_1289_c_1_99 108541 109701 - 2.A.103.1.3
pfam Rep_1289_c_1 Rep_1289_c_1_100 109710 111062 - Mur_ligase_C | Mur_ligase_M | MurD-like_N
TC Rep_1289_c_1 Rep_1289_c_1_101 111136 111825 - 9.B.143.2.3
pfam Rep_1289_c_1 Rep_1289_c_1_102 111838 114480 - tRNA-synt_2c | DHHA1 | tRNA_SAD
pfam Rep_1289_c_1 Rep_1289_c_1_103 114766 115800 - RF-1 | PCRF
TC Rep_1289_c_1 Rep_1289_c_1_104 115867 118554 - 3.A.5.1.3
TC Rep_1289_c_1 Rep_1289_c_1_105 118629 120836 - 9.B.34.1.2
Gene ID: Rep_1289_c_1_98
Type: CAZyme
Location: 107456 - 108544 (-)
Gene ID: Rep_1289_c_1_99
Type: TC
Location: 108541 - 109701 (-)
Gene ID: Rep_1289_c_1_100
Type: pfam
Location: 109710 - 111062 (-)
Gene ID: Rep_1289_c_1_101
Type: TC
Location: 111136 - 111825 (-)
Gene ID: Rep_1289_c_1_102
Type: pfam
Location: 111838 - 114480 (-)
Gene ID: Rep_1289_c_1_103
Type: pfam
Location: 114766 - 115800 (-)
Gene ID: Rep_1289_c_1_104
Type: TC
Location: 115867 - 118554 (-)
Gene ID: Rep_1289_c_1_105
Type: TC
Location: 118629 - 120836 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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