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Cluster: Rep_1289_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1289_c_24 Rep_1289_c_24_11 10332 11456 + GT28
TC Rep_1289_c_24 Rep_1289_c_24_12 11480 12394 + 3.A.1.7.5
TC Rep_1289_c_24 Rep_1289_c_24_13 12396 13274 + 3.A.1.7.5
TC Rep_1289_c_24 Rep_1289_c_24_14 13274 14026 + 3.A.1.7.5
pfam Rep_1289_c_24 Rep_1289_c_24_15 14028 14765 + PhoU | PhoU
TC Rep_1289_c_24 Rep_1289_c_24_16 14832 16436 - 2.A.58.2.2
TC Rep_1289_c_24 Rep_1289_c_24_17 16695 18023 - 9.B.34.1.2
TC Rep_1289_c_24 Rep_1289_c_24_18 18378 18866 - 3.D.1.5.1
Gene ID: Rep_1289_c_24_11
Type: CAZyme
Location: 10332 - 11456 (+)
Gene ID: Rep_1289_c_24_12
Type: TC
Location: 11480 - 12394 (+)
Gene ID: Rep_1289_c_24_13
Type: TC
Location: 12396 - 13274 (+)
Gene ID: Rep_1289_c_24_14
Type: TC
Location: 13274 - 14026 (+)
Gene ID: Rep_1289_c_24_15
Type: pfam
Location: 14028 - 14765 (+)
Gene ID: Rep_1289_c_24_16
Type: TC
Location: 14832 - 16436 (-)
Gene ID: Rep_1289_c_24_17
Type: TC
Location: 16695 - 18023 (-)
Gene ID: Rep_1289_c_24_18
Type: TC
Location: 18378 - 18866 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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