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Cluster: Rep_1274_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1274_c_8 Rep_1274_c_8_8 4894 6573 + 9.B.33.1.1
TF Rep_1274_c_8 Rep_1274_c_8_9 6566 7342 + HTH_AraC | HTH_AraC
TC Rep_1274_c_8 Rep_1274_c_8_10 7444 8496 + 3.A.1.20.1
TC Rep_1274_c_8 Rep_1274_c_8_11 8512 9588 + 3.A.1.20.1
TC Rep_1274_c_8 Rep_1274_c_8_12 9590 11233 + 3.A.1.20.1
NULL(UNKNOWN) Rep_1274_c_8 Rep_1274_c_8_13 11524 11979 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_1274_c_8 Rep_1274_c_8_14 11991 12389 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1274_c_8 Rep_1274_c_8_15 12829 13815 + GT2
Gene ID: Rep_1274_c_8_8
Type: TC
Location: 4894 - 6573 (+)
Gene ID: Rep_1274_c_8_9
Type: TF
Location: 6566 - 7342 (+)
Gene ID: Rep_1274_c_8_10
Type: TC
Location: 7444 - 8496 (+)
Gene ID: Rep_1274_c_8_11
Type: TC
Location: 8512 - 9588 (+)
Gene ID: Rep_1274_c_8_12
Type: TC
Location: 9590 - 11233 (+)
Gene ID: Rep_1274_c_8_13
Type:
Location: 11524 - 11979 (+)
Gene ID: Rep_1274_c_8_14
Type:
Location: 11991 - 12389 (+)
Gene ID: Rep_1274_c_8_15
Type: CAZyme
Location: 12829 - 13815 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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