dbCAN Logo

Cluster: Rep_1274_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1274_c_6 Rep_1274_c_6_8 7040 8011 - GT2
CAZyme Rep_1274_c_6 Rep_1274_c_6_9 8020 8973 - GT2
CAZyme Rep_1274_c_6 Rep_1274_c_6_10 8970 10127 - GT4
pfam Rep_1274_c_6 Rep_1274_c_6_11 10129 11625 - O-antigen_lig
CAZyme Rep_1274_c_6 Rep_1274_c_6_12 11618 12577 - GT2
TC Rep_1274_c_6 Rep_1274_c_6_13 12574 14091 - 2.A.66.1.40
pfam Rep_1274_c_6 Rep_1274_c_6_14 14066 14920 - LicD
NULL(UNKNOWN) Rep_1274_c_6 Rep_1274_c_6_15 15067 15588 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1274_c_6 Rep_1274_c_6_16 15636 16805 - 2.A.4.7.2
Gene ID: Rep_1274_c_6_8
Type: CAZyme
Location: 7040 - 8011 (-)
Gene ID: Rep_1274_c_6_9
Type: CAZyme
Location: 8020 - 8973 (-)
Gene ID: Rep_1274_c_6_10
Type: CAZyme
Location: 8970 - 10127 (-)
Gene ID: Rep_1274_c_6_11
Type: pfam
Location: 10129 - 11625 (-)
Gene ID: Rep_1274_c_6_12
Type: CAZyme
Location: 11618 - 12577 (-)
Gene ID: Rep_1274_c_6_13
Type: TC
Location: 12574 - 14091 (-)
Gene ID: Rep_1274_c_6_14
Type: pfam
Location: 14066 - 14920 (-)
Gene ID: Rep_1274_c_6_15
Type:
Location: 15067 - 15588 (+)
Gene ID: Rep_1274_c_6_16
Type: TC
Location: 15636 - 16805 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List