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Cluster: Rep_1274_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1274_c_2 Rep_1274_c_2_11 8509 9786 - 4.A.7.1.2
pfam Rep_1274_c_2 Rep_1274_c_2_12 9815 10093 - PTS_IIB
TC Rep_1274_c_2 Rep_1274_c_2_13 10114 10554 - 4.A.7.1.2
TC Rep_1274_c_2 Rep_1274_c_2_14 10996 12651 - 3.A.1.2.3
TC Rep_1274_c_2 Rep_1274_c_2_15 12669 14177 - 3.A.1.2.3
pfam Rep_1274_c_2 Rep_1274_c_2_16 14270 15550 - Peripla_BP_4 | Peripla_BP_7
TC Rep_1274_c_2 Rep_1274_c_2_17 15757 16788 - 3.A.1.2.3
STP Rep_1274_c_2 Rep_1274_c_2_18 16800 17807 - Peripla_BP_1
TC Rep_1274_c_2 Rep_1274_c_2_19 17798 19588 - 8.A.59.2.1
TF Rep_1274_c_2 Rep_1274_c_2_20 19588 21207 - HTH_AraC | HTH_AraC
CAZyme Rep_1274_c_2 Rep_1274_c_2_21 21386 22708 - GH4
TC Rep_1274_c_2 Rep_1274_c_2_22 22692 23024 - 4.A.3.2.7
TC Rep_1274_c_2 Rep_1274_c_2_23 23026 23328 - 4.A.3.2.6
Gene ID: Rep_1274_c_2_11
Type: TC
Location: 8509 - 9786 (-)
Gene ID: Rep_1274_c_2_12
Type: pfam
Location: 9815 - 10093 (-)
Gene ID: Rep_1274_c_2_13
Type: TC
Location: 10114 - 10554 (-)
Gene ID: Rep_1274_c_2_14
Type: TC
Location: 10996 - 12651 (-)
Gene ID: Rep_1274_c_2_15
Type: TC
Location: 12669 - 14177 (-)
Gene ID: Rep_1274_c_2_16
Type: pfam
Location: 14270 - 15550 (-)
Gene ID: Rep_1274_c_2_17
Type: TC
Location: 15757 - 16788 (-)
Gene ID: Rep_1274_c_2_18
Type: STP
Location: 16800 - 17807 (-)
Gene ID: Rep_1274_c_2_19
Type: TC
Location: 17798 - 19588 (-)
Gene ID: Rep_1274_c_2_20
Type: TF
Location: 19588 - 21207 (-)
Gene ID: Rep_1274_c_2_21
Type: CAZyme
Location: 21386 - 22708 (-)
Gene ID: Rep_1274_c_2_22
Type: TC
Location: 22692 - 23024 (-)
Gene ID: Rep_1274_c_2_23
Type: TC
Location: 23026 - 23328 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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