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Cluster: Rep_1274_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1274_c_72 Rep_1274_c_72_2 108 929 + GH1
CAZyme Rep_1274_c_72 Rep_1274_c_72_3 923 1510 + GH1
pfam Rep_1274_c_72 Rep_1274_c_72_4 1507 2199 + YdjC
pfam Rep_1274_c_72 Rep_1274_c_72_5 2213 3127 + Mem_trans
TC Rep_1274_c_72 Rep_1274_c_72_6 3394 4188 - 3.A.1.34.1
TC Rep_1274_c_72 Rep_1274_c_72_7 4181 5077 - 3.A.1.34.1
TC Rep_1274_c_72 Rep_1274_c_72_8 5101 6102 - 3.A.1.34.1
TC Rep_1274_c_72 Rep_1274_c_72_9 6639 7814 + 9.B.34.1.3
Gene ID: Rep_1274_c_72_2
Type: CAZyme
Location: 108 - 929 (+)
Gene ID: Rep_1274_c_72_3
Type: CAZyme
Location: 923 - 1510 (+)
Gene ID: Rep_1274_c_72_4
Type: pfam
Location: 1507 - 2199 (+)
Gene ID: Rep_1274_c_72_5
Type: pfam
Location: 2213 - 3127 (+)
Gene ID: Rep_1274_c_72_6
Type: TC
Location: 3394 - 4188 (-)
Gene ID: Rep_1274_c_72_7
Type: TC
Location: 4181 - 5077 (-)
Gene ID: Rep_1274_c_72_8
Type: TC
Location: 5101 - 6102 (-)
Gene ID: Rep_1274_c_72_9
Type: TC
Location: 6639 - 7814 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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