Cluster: Rep_126_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_126
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_126_c_2 | Rep_126_c_2_555 | 672380 | 673201 | - | GT2 |
| CAZyme | Rep_126_c_2 | Rep_126_c_2_556 | 673249 | 674520 | - | GT4 |
| CAZyme | Rep_126_c_2 | Rep_126_c_2_557 | 674708 | 675901 | - | GT30 |
| pfam | Rep_126_c_2 | Rep_126_c_2_558 | 676050 | 677564 | - | tRNA-synt_1c | Anticodon_2 |
| pfam | Rep_126_c_2 | Rep_126_c_2_559 | 677878 | 679920 | + | DsbD_TM | DsbD_N | Thioredoxin_7 |
| TC | Rep_126_c_2 | Rep_126_c_2_560 | 681004 | 681762 | - | 3.D.10.1.5 |
| TC | Rep_126_c_2 | Rep_126_c_2_561 | 681769 | 683745 | - | 3.D.10.1.5 |
Gene ID: Rep_126_c_2_555
Type: CAZyme
Location: 672380 - 673201 (-)
Type: CAZyme
Location: 672380 - 673201 (-)
Gene ID: Rep_126_c_2_556
Type: CAZyme
Location: 673249 - 674520 (-)
Type: CAZyme
Location: 673249 - 674520 (-)
Gene ID: Rep_126_c_2_557
Type: CAZyme
Location: 674708 - 675901 (-)
Type: CAZyme
Location: 674708 - 675901 (-)
Gene ID: Rep_126_c_2_558
Type: pfam
Location: 676050 - 677564 (-)
Type: pfam
Location: 676050 - 677564 (-)
Gene ID: Rep_126_c_2_559
Type: pfam
Location: 677878 - 679920 (+)
Type: pfam
Location: 677878 - 679920 (+)
Gene ID: Rep_126_c_2_560
Type: TC
Location: 681004 - 681762 (-)
Type: TC
Location: 681004 - 681762 (-)
Gene ID: Rep_126_c_2_561
Type: TC
Location: 681769 - 683745 (-)
Type: TC
Location: 681769 - 683745 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.