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Cluster: Rep_126_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_126_c_2 Rep_126_c_2_1294 1652844 1653170 + 2.A.7.1.4
TC Rep_126_c_2 Rep_126_c_2_1295 1653184 1654377 + 2.A.1.36.3
pfam Rep_126_c_2 Rep_126_c_2_1296 1654553 1657447 + LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5
NULL(UNKNOWN) Rep_126_c_2 Rep_126_c_2_1297 1657573 1657878 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_126_c_2 Rep_126_c_2_1298 1658054 1659283 - 2.A.1.35.1
pfam Rep_126_c_2 Rep_126_c_2_1299 1659658 1660113 + DUF386
CAZyme Rep_126_c_2 Rep_126_c_2_1300 1660954 1663443 - GH95
pfam Rep_126_c_2 Rep_126_c_2_1301 1663810 1664949 - Metallophos
TC Rep_126_c_2 Rep_126_c_2_1302 1665238 1666275 - 9.A.40.2.2
Gene ID: Rep_126_c_2_1294
Type: TC
Location: 1652844 - 1653170 (+)
Gene ID: Rep_126_c_2_1295
Type: TC
Location: 1653184 - 1654377 (+)
Gene ID: Rep_126_c_2_1296
Type: pfam
Location: 1654553 - 1657447 (+)
Gene ID: Rep_126_c_2_1297
Type:
Location: 1657573 - 1657878 (-)
Gene ID: Rep_126_c_2_1298
Type: TC
Location: 1658054 - 1659283 (-)
Gene ID: Rep_126_c_2_1299
Type: pfam
Location: 1659658 - 1660113 (+)
Gene ID: Rep_126_c_2_1300
Type: CAZyme
Location: 1660954 - 1663443 (-)
Gene ID: Rep_126_c_2_1301
Type: pfam
Location: 1663810 - 1664949 (-)
Gene ID: Rep_126_c_2_1302
Type: TC
Location: 1665238 - 1666275 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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