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Cluster: Rep_1267_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1267_c_48 Rep_1267_c_48_1 2 1225 - 3.D.1.5.1
TC Rep_1267_c_48 Rep_1267_c_48_2 1230 1721 - 3.D.1.5.1
pfam Rep_1267_c_48 Rep_1267_c_48_3 1847 2518 - UDG
pfam Rep_1267_c_48 Rep_1267_c_48_4 2530 4386 - DUF885
CAZyme Rep_1267_c_48 Rep_1267_c_48_5 4437 6581 - GH13_14
CAZyme Rep_1267_c_48 Rep_1267_c_48_6 6620 9025 - GT35
pfam Rep_1267_c_48 Rep_1267_c_48_7 9340 11022 - PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
STP Rep_1267_c_48 Rep_1267_c_48_8 11102 11368 - PTS-HPr
CAZyme Rep_1267_c_48 Rep_1267_c_48_9 11497 13002 - GH77
Gene ID: Rep_1267_c_48_1
Type: TC
Location: 2 - 1225 (-)
Gene ID: Rep_1267_c_48_2
Type: TC
Location: 1230 - 1721 (-)
Gene ID: Rep_1267_c_48_3
Type: pfam
Location: 1847 - 2518 (-)
Gene ID: Rep_1267_c_48_4
Type: pfam
Location: 2530 - 4386 (-)
Gene ID: Rep_1267_c_48_5
Type: CAZyme
Location: 4437 - 6581 (-)
Gene ID: Rep_1267_c_48_6
Type: CAZyme
Location: 6620 - 9025 (-)
Gene ID: Rep_1267_c_48_7
Type: pfam
Location: 9340 - 11022 (-)
Gene ID: Rep_1267_c_48_8
Type: STP
Location: 11102 - 11368 (-)
Gene ID: Rep_1267_c_48_9
Type: CAZyme
Location: 11497 - 13002 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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