Cluster: Rep_1261_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_1261
- CGC Family ID: CGCFAM_00006
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1261_c_53 | Rep_1261_c_53_2 | 1469 | 2464 | - | GT2 |
| TC | Rep_1261_c_53 | Rep_1261_c_53_3 | 2469 | 3851 | - | 9.B.67.3.2 |
| CAZyme | Rep_1261_c_53 | Rep_1261_c_53_4 | 3848 | 4942 | - | GT4 |
| CAZyme | Rep_1261_c_53 | Rep_1261_c_53_5 | 4939 | 5826 | - | GT2 |
| pfam | Rep_1261_c_53 | Rep_1261_c_53_6 | 5810 | 6436 | - | Hexapep | Hexapep_2 |
| TC | Rep_1261_c_53 | Rep_1261_c_53_7 | 6433 | 7695 | - | 2.A.66.2.10 |
Gene ID: Rep_1261_c_53_2
Type: CAZyme
Location: 1469 - 2464 (-)
Type: CAZyme
Location: 1469 - 2464 (-)
Gene ID: Rep_1261_c_53_3
Type: TC
Location: 2469 - 3851 (-)
Type: TC
Location: 2469 - 3851 (-)
Gene ID: Rep_1261_c_53_4
Type: CAZyme
Location: 3848 - 4942 (-)
Type: CAZyme
Location: 3848 - 4942 (-)
Gene ID: Rep_1261_c_53_5
Type: CAZyme
Location: 4939 - 5826 (-)
Type: CAZyme
Location: 4939 - 5826 (-)
Gene ID: Rep_1261_c_53_6
Type: pfam
Location: 5810 - 6436 (-)
Type: pfam
Location: 5810 - 6436 (-)
Gene ID: Rep_1261_c_53_7
Type: TC
Location: 6433 - 7695 (-)
Type: TC
Location: 6433 - 7695 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Faecalicoccus
Species
Faecalicoccus sp902497095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_1261_c_53_2 | vegetarian > omnivore | 1.41179 | 0.04288 |
| Rep_1261_c_53_3 | vegetarian > omnivore | 1.58148 | 0.04288 |
| Rep_1261_c_53_4 | vegetarian > omnivore | 1.10810 | 0.04288 |
| Rep_1261_c_53_5 | vegetarian > omnivore | 1.14674 | 0.04288 |
| Rep_1261_c_53_6 | vegetarian > omnivore | 1.10222 | 0.04288 |
| Rep_1261_c_53_7 | vegetarian > omnivore | 1.31951 | 0.04288 |