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Cluster: Rep_1261_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1261_c_30 Rep_1261_c_30_13 9698 10861 - 2.A.4.7.9
pfam Rep_1261_c_30 Rep_1261_c_30_14 11327 11626 - DUF4491
CAZyme Rep_1261_c_30 Rep_1261_c_30_15 11650 13845 - AA2 | AA2
pfam Rep_1261_c_30 Rep_1261_c_30_16 14231 17263 - TED | SpaA | SpaA | SpaA | SpaA
TC Rep_1261_c_30 Rep_1261_c_30_17 17995 18321 - 2.A.78.1.1
TC Rep_1261_c_30 Rep_1261_c_30_18 18318 19025 - 2.A.78.1.1
pfam Rep_1261_c_30 Rep_1261_c_30_19 19082 21592 + GTP_EFTU | EFG_C | MMR_HSR1 | EFG_IV | NYN_YacP | EFG_III
pfam Rep_1261_c_30 Rep_1261_c_30_20 21604 22200 - TRM5-TYW2_MTfase | MTS | PrmA | Methyltransf_11 | Methyltransf_16 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
CAZyme Rep_1261_c_30 Rep_1261_c_30_21 22259 24085 - CBM48 | GH13_9
Gene ID: Rep_1261_c_30_13
Type: TC
Location: 9698 - 10861 (-)
Gene ID: Rep_1261_c_30_14
Type: pfam
Location: 11327 - 11626 (-)
Gene ID: Rep_1261_c_30_15
Type: CAZyme
Location: 11650 - 13845 (-)
Gene ID: Rep_1261_c_30_16
Type: pfam
Location: 14231 - 17263 (-)
Gene ID: Rep_1261_c_30_17
Type: TC
Location: 17995 - 18321 (-)
Gene ID: Rep_1261_c_30_18
Type: TC
Location: 18318 - 19025 (-)
Gene ID: Rep_1261_c_30_19
Type: pfam
Location: 19082 - 21592 (+)
Gene ID: Rep_1261_c_30_20
Type: pfam
Location: 21604 - 22200 (-)
Gene ID: Rep_1261_c_30_21
Type: CAZyme
Location: 22259 - 24085 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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