dbCAN Logo

Cluster: Rep_1258_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1258_c_1 Rep_1258_c_1_102 98425 98853 + 4.A.6.1.7
pfam Rep_1258_c_1 Rep_1258_c_1_103 98911 99402 + PTSIIB_sorb
pfam Rep_1258_c_1 Rep_1258_c_1_104 99461 100300 + EII-Sor
TC Rep_1258_c_1 Rep_1258_c_1_105 100303 101118 + 4.A.6.1.1
NULL(UNKNOWN) Rep_1258_c_1 Rep_1258_c_1_106 101187 101522 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1258_c_1 Rep_1258_c_1_107 101949 102701 + PHP
CAZyme Rep_1258_c_1 Rep_1258_c_1_108 102957 104018 + GT4
TC Rep_1258_c_1 Rep_1258_c_1_109 104037 105092 + 4.D.2.1.5
CAZyme Rep_1258_c_1 Rep_1258_c_1_110 105097 107067 + GT4
Gene ID: Rep_1258_c_1_102
Type: TC
Location: 98425 - 98853 (+)
Gene ID: Rep_1258_c_1_103
Type: pfam
Location: 98911 - 99402 (+)
Gene ID: Rep_1258_c_1_104
Type: pfam
Location: 99461 - 100300 (+)
Gene ID: Rep_1258_c_1_105
Type: TC
Location: 100303 - 101118 (+)
Gene ID: Rep_1258_c_1_106
Type:
Location: 101187 - 101522 (+)
Gene ID: Rep_1258_c_1_107
Type: pfam
Location: 101949 - 102701 (+)
Gene ID: Rep_1258_c_1_108
Type: CAZyme
Location: 102957 - 104018 (+)
Gene ID: Rep_1258_c_1_109
Type: TC
Location: 104037 - 105092 (+)
Gene ID: Rep_1258_c_1_110
Type: CAZyme
Location: 105097 - 107067 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List