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Cluster: Rep_1258_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1258_c_1 Rep_1258_c_1_40 38707 40098 - GH73
pfam Rep_1258_c_1 Rep_1258_c_1_41 40248 41324 + RF-1 | PCRF
pfam Rep_1258_c_1 Rep_1258_c_1_42 41321 42166 + MTS | Methyltransf_25 | Methyltransf_31 | PrmC_N
TC Rep_1258_c_1 Rep_1258_c_1_43 42219 43568 + 2.A.66.1.32
peptidase Rep_1258_c_1 Rep_1258_c_1_44 43628 44494 + M24.UPA
pfam Rep_1258_c_1 Rep_1258_c_1_45 44581 46722 + S1 | Tex_N | HHH_3 | HHH_7 | Tex_YqgF | HHH_9 | Tex_central_region
TC Rep_1258_c_1 Rep_1258_c_1_46 46773 48524 - 3.A.1.21.1
TC Rep_1258_c_1 Rep_1258_c_1_47 48525 50330 - 3.A.1.21.1
Gene ID: Rep_1258_c_1_40
Type: CAZyme
Location: 38707 - 40098 (-)
Gene ID: Rep_1258_c_1_41
Type: pfam
Location: 40248 - 41324 (+)
Gene ID: Rep_1258_c_1_42
Type: pfam
Location: 41321 - 42166 (+)
Gene ID: Rep_1258_c_1_43
Type: TC
Location: 42219 - 43568 (+)
Gene ID: Rep_1258_c_1_44
Type: peptidase
Location: 43628 - 44494 (+)
Gene ID: Rep_1258_c_1_45
Type: pfam
Location: 44581 - 46722 (+)
Gene ID: Rep_1258_c_1_46
Type: TC
Location: 46773 - 48524 (-)
Gene ID: Rep_1258_c_1_47
Type: TC
Location: 48525 - 50330 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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