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Cluster: Rep_1258_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1258_c_25 Rep_1258_c_25_4 2628 4037 + GH77
pfam Rep_1258_c_25 Rep_1258_c_25_5 4099 4950 - VCA0040-like
TF Rep_1258_c_25 Rep_1258_c_25_6 5124 5657 + HTH_3
TC Rep_1258_c_25 Rep_1258_c_25_7 5679 7259 + 3.A.1.11.8
TC Rep_1258_c_25 Rep_1258_c_25_8 7259 8089 + 3.A.1.11.1
TC Rep_1258_c_25 Rep_1258_c_25_9 8086 8892 + 3.A.1.11.8
TC Rep_1258_c_25 Rep_1258_c_25_10 8873 9955 + 3.A.1.11.7
TC Rep_1258_c_25 Rep_1258_c_25_11 10310 11566 + 2.A.40.1.1
Gene ID: Rep_1258_c_25_4
Type: CAZyme
Location: 2628 - 4037 (+)
Gene ID: Rep_1258_c_25_5
Type: pfam
Location: 4099 - 4950 (-)
Gene ID: Rep_1258_c_25_6
Type: TF
Location: 5124 - 5657 (+)
Gene ID: Rep_1258_c_25_7
Type: TC
Location: 5679 - 7259 (+)
Gene ID: Rep_1258_c_25_8
Type: TC
Location: 7259 - 8089 (+)
Gene ID: Rep_1258_c_25_9
Type: TC
Location: 8086 - 8892 (+)
Gene ID: Rep_1258_c_25_10
Type: TC
Location: 8873 - 9955 (+)
Gene ID: Rep_1258_c_25_11
Type: TC
Location: 10310 - 11566 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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