Cluster: Rep_1238_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1238
- CGC Family ID: CGCFAM_00605
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1238_c_55 | Rep_1238_c_55_24 | 23632 | 25029 | + | GH1 |
| TC | Rep_1238_c_55 | Rep_1238_c_55_25 | 25042 | 26331 | + | 4.A.3.2.8 |
| peptidase | Rep_1238_c_55 | Rep_1238_c_55_26 | 26479 | 27702 | - | M20.UPB |
| TF | Rep_1238_c_55 | Rep_1238_c_55_27 | 27827 | 28270 | + | MarR |
| TC | Rep_1238_c_55 | Rep_1238_c_55_28 | 28314 | 30044 | + | 3.A.1.135.5 |
| TC | Rep_1238_c_55 | Rep_1238_c_55_29 | 30044 | 31894 | + | 3.A.1.135.5 |
Gene ID: Rep_1238_c_55_24
Type: CAZyme
Location: 23632 - 25029 (+)
Type: CAZyme
Location: 23632 - 25029 (+)
Gene ID: Rep_1238_c_55_25
Type: TC
Location: 25042 - 26331 (+)
Type: TC
Location: 25042 - 26331 (+)
Gene ID: Rep_1238_c_55_26
Type: peptidase
Location: 26479 - 27702 (-)
Type: peptidase
Location: 26479 - 27702 (-)
Gene ID: Rep_1238_c_55_27
Type: TF
Location: 27827 - 28270 (+)
Type: TF
Location: 27827 - 28270 (+)
Gene ID: Rep_1238_c_55_28
Type: TC
Location: 28314 - 30044 (+)
Type: TC
Location: 28314 - 30044 (+)
Gene ID: Rep_1238_c_55_29
Type: TC
Location: 30044 - 31894 (+)
Type: TC
Location: 30044 - 31894 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Faecalibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_1238_c_55_25 | vegan > omnivore | 3.63082 | 0.00574 |
| Rep_1238_c_55_27 | vegan > omnivore | 1.34609 | 0.00574 |