Cluster: Rep_1238_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1238
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1238_c_313 | Rep_1238_c_313_1 | 197 | 1201 | + | GT4 |
| pfam | Rep_1238_c_313 | Rep_1238_c_313_2 | 1213 | 2325 | + | LPG_synthase_TM |
| CAZyme | Rep_1238_c_313 | Rep_1238_c_313_3 | 2335 | 4329 | + | GT4 |
| STP | Rep_1238_c_313 | Rep_1238_c_313_4 | 4322 | 5272 | + | HD |
| TC | Rep_1238_c_313 | Rep_1238_c_313_5 | 5388 | 5693 | + | 4.A.3.2.3 |
Gene ID: Rep_1238_c_313_1
Type: CAZyme
Location: 197 - 1201 (+)
Type: CAZyme
Location: 197 - 1201 (+)
Gene ID: Rep_1238_c_313_2
Type: pfam
Location: 1213 - 2325 (+)
Type: pfam
Location: 1213 - 2325 (+)
Gene ID: Rep_1238_c_313_3
Type: CAZyme
Location: 2335 - 4329 (+)
Type: CAZyme
Location: 2335 - 4329 (+)
Gene ID: Rep_1238_c_313_4
Type: STP
Location: 4322 - 5272 (+)
Type: STP
Location: 4322 - 5272 (+)
Gene ID: Rep_1238_c_313_5
Type: TC
Location: 5388 - 5693 (+)
Type: TC
Location: 5388 - 5693 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Faecalibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_1238_c_313_1 | vegan > omnivore | 1.34177 | 0.00574 |
| Rep_1238_c_313_5 | vegan > omnivore | 2.92062 | 0.00574 |