Cluster: Rep_1238_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1238
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1238_c_129 | Rep_1238_c_129_4 | 1726 | 2358 | + | 1.A.34.1.1 |
| TC | Rep_1238_c_129 | Rep_1238_c_129_5 | 2462 | 3451 | + | 9.B.157.1.1 |
| pfam | Rep_1238_c_129 | Rep_1238_c_129_6 | 3538 | 4311 | + | Hydrolase | Hydrolase_3 |
| CAZyme | Rep_1238_c_129 | Rep_1238_c_129_7 | 4349 | 5497 | - | GH170 |
| TC | Rep_1238_c_129 | Rep_1238_c_129_8 | 5635 | 7314 | + | 9.B.146.1.1 |
Gene ID: Rep_1238_c_129_4
Type: TC
Location: 1726 - 2358 (+)
Type: TC
Location: 1726 - 2358 (+)
Gene ID: Rep_1238_c_129_5
Type: TC
Location: 2462 - 3451 (+)
Type: TC
Location: 2462 - 3451 (+)
Gene ID: Rep_1238_c_129_6
Type: pfam
Location: 3538 - 4311 (+)
Type: pfam
Location: 3538 - 4311 (+)
Gene ID: Rep_1238_c_129_7
Type: CAZyme
Location: 4349 - 5497 (-)
Type: CAZyme
Location: 4349 - 5497 (-)
Gene ID: Rep_1238_c_129_8
Type: TC
Location: 5635 - 7314 (+)
Type: TC
Location: 5635 - 7314 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Faecalibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_1238_c_129_4 | vegan > omnivore | 1.23273 | 0.00574 |
| Rep_1238_c_129_7 | vegan > omnivore | 2.28130 | 0.00574 |
| Rep_1238_c_129_7 | vegetarian > omnivore | 2.20100 | 0.03762 |
| Rep_1238_c_129_8 | vegan > omnivore | 1.48375 | 0.00574 |