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Cluster: Rep_1238_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1238_c_118 Rep_1238_c_118_1 2 316 + 3.A.3.2.41
TC Rep_1238_c_118 Rep_1238_c_118_2 292 1215 + 3.A.3.2.21
TC Rep_1238_c_118 Rep_1238_c_118_3 1212 1487 + 3.A.3.2.28
NULL(UNKNOWN) Rep_1238_c_118 Rep_1238_c_118_4 1574 2218 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1238_c_118 Rep_1238_c_118_5 2492 2977 + 3.A.3.2.21
TC Rep_1238_c_118 Rep_1238_c_118_6 3154 4491 + 2.A.66.1.33
pfam Rep_1238_c_118 Rep_1238_c_118_7 4520 5191 - RelA_SpoT
CAZyme Rep_1238_c_118 Rep_1238_c_118_8 5277 6689 - GH1
Gene ID: Rep_1238_c_118_1
Type: TC
Location: 2 - 316 (+)
Gene ID: Rep_1238_c_118_2
Type: TC
Location: 292 - 1215 (+)
Gene ID: Rep_1238_c_118_3
Type: TC
Location: 1212 - 1487 (+)
Gene ID: Rep_1238_c_118_4
Type:
Location: 1574 - 2218 (+)
Gene ID: Rep_1238_c_118_5
Type: TC
Location: 2492 - 2977 (+)
Gene ID: Rep_1238_c_118_6
Type: TC
Location: 3154 - 4491 (+)
Gene ID: Rep_1238_c_118_7
Type: pfam
Location: 4520 - 5191 (-)
Gene ID: Rep_1238_c_118_8
Type: CAZyme
Location: 5277 - 6689 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1238_c_118_6 vegan > omnivore 1.26112 0.00574
Rep_1238_c_118_7 vegan > omnivore 2.03102 0.00574
Rep_1238_c_118_8 vegan > omnivore 2.00979 0.00574

🧭 Explore Read Mapping of CGC

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