Cluster: Rep_1219_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1219
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1219_c_3 | Rep_1219_c_3_26 | 19221 | 19916 | + | 3.A.1.132.6 |
| NULL(UNKNOWN) | Rep_1219_c_3 | Rep_1219_c_3_27 | 19910 | 20701 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_1219_c_3 | Rep_1219_c_3_28 | 20810 | 21361 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1219_c_3 | Rep_1219_c_3_29 | 21525 | 23102 | + | 3.A.18.1.1 |
| pfam | Rep_1219_c_3 | Rep_1219_c_3_30 | 23216 | 24985 | + | GIY-YIG | UVR | UvrC_RNaseH_dom | UvrC_RNaseH |
| CAZyme | Rep_1219_c_3 | Rep_1219_c_3_31 | 25112 | 26278 | + | GH25 |
Gene ID: Rep_1219_c_3_26
Type: TC
Location: 19221 - 19916 (+)
Type: TC
Location: 19221 - 19916 (+)
Gene ID: Rep_1219_c_3_27
Type:
Location: 19910 - 20701 (+)
Type:
Location: 19910 - 20701 (+)
Gene ID: Rep_1219_c_3_28
Type:
Location: 20810 - 21361 (+)
Type:
Location: 20810 - 21361 (+)
Gene ID: Rep_1219_c_3_29
Type: TC
Location: 21525 - 23102 (+)
Type: TC
Location: 21525 - 23102 (+)
Gene ID: Rep_1219_c_3_30
Type: pfam
Location: 23216 - 24985 (+)
Type: pfam
Location: 23216 - 24985 (+)
Gene ID: Rep_1219_c_3_31
Type: CAZyme
Location: 25112 - 26278 (+)
Type: CAZyme
Location: 25112 - 26278 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RF39
Family
UBA660
Genus
Aphodocola
Species
Aphodocola sp900759985
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.