Cluster: Rep_1219_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1219
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1219_c_1 | Rep_1219_c_1_125 | 117530 | 118168 | + | 3.A.1.124.1 |
| NULL(UNKNOWN) | Rep_1219_c_1 | Rep_1219_c_1_126 | 118194 | 118289 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_1219_c_1 | Rep_1219_c_1_127 | 118447 | 120285 | + | DUF6020 |
| CAZyme | Rep_1219_c_1 | Rep_1219_c_1_128 | 120272 | 121198 | + | GT2 |
| NULL(UNKNOWN) | Rep_1219_c_1 | Rep_1219_c_1_129 | 121223 | 122179 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1219_c_1 | Rep_1219_c_1_130 | 122274 | 123374 | + | GT28 |
Gene ID: Rep_1219_c_1_125
Type: TC
Location: 117530 - 118168 (+)
Type: TC
Location: 117530 - 118168 (+)
Gene ID: Rep_1219_c_1_126
Type:
Location: 118194 - 118289 (-)
Type:
Location: 118194 - 118289 (-)
Gene ID: Rep_1219_c_1_127
Type: pfam
Location: 118447 - 120285 (+)
Type: pfam
Location: 118447 - 120285 (+)
Gene ID: Rep_1219_c_1_128
Type: CAZyme
Location: 120272 - 121198 (+)
Type: CAZyme
Location: 120272 - 121198 (+)
Gene ID: Rep_1219_c_1_129
Type:
Location: 121223 - 122179 (+)
Type:
Location: 121223 - 122179 (+)
Gene ID: Rep_1219_c_1_130
Type: CAZyme
Location: 122274 - 123374 (+)
Type: CAZyme
Location: 122274 - 123374 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RF39
Family
UBA660
Genus
Aphodocola
Species
Aphodocola sp900759985
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.