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Cluster: Rep_1219_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1219_c_0 Rep_1219_c_0_49 46622 47776 + CBM50 | CBM50 | CBM50
pfam Rep_1219_c_0 Rep_1219_c_0_50 47804 48319 - Hydrolase_2
NULL(UNKNOWN) Rep_1219_c_0 Rep_1219_c_0_51 48270 48464 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1219_c_0 Rep_1219_c_0_52 48518 49711 - CBM50 | CBM50
pfam Rep_1219_c_0 Rep_1219_c_0_53 49791 50483 + PNP_UDP_1
TC Rep_1219_c_0 Rep_1219_c_0_54 50527 50991 + 9.A.24.1.7
TC Rep_1219_c_0 Rep_1219_c_0_55 51118 51819 + 3.A.1.122.14
TC Rep_1219_c_0 Rep_1219_c_0_56 51821 55090 + 3.A.1.137.2
Gene ID: Rep_1219_c_0_49
Type: CAZyme
Location: 46622 - 47776 (+)
Gene ID: Rep_1219_c_0_50
Type: pfam
Location: 47804 - 48319 (-)
Gene ID: Rep_1219_c_0_51
Type:
Location: 48270 - 48464 (-)
Gene ID: Rep_1219_c_0_52
Type: CAZyme
Location: 48518 - 49711 (-)
Gene ID: Rep_1219_c_0_53
Type: pfam
Location: 49791 - 50483 (+)
Gene ID: Rep_1219_c_0_54
Type: TC
Location: 50527 - 50991 (+)
Gene ID: Rep_1219_c_0_55
Type: TC
Location: 51118 - 51819 (+)
Gene ID: Rep_1219_c_0_56
Type: TC
Location: 51821 - 55090 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_I
→
Class
Bacilli_A
→
Order
RF39
→
Family
UBA660
→
Genus
Aphodocola
→
Species
Aphodocola sp900759985

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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