Cluster: Rep_1201_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1201
- CGC Family ID: CGCFAM_05212
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1201_c_40 | Rep_1201_c_40_55 | 49725 | 50909 | - | GT4 |
| pfam | Rep_1201_c_40 | Rep_1201_c_40_56 | 50919 | 52385 | - | LPG_synthase_TM |
| NULL(UNKNOWN) | Rep_1201_c_40 | Rep_1201_c_40_57 | 52429 | 53010 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1201_c_40 | Rep_1201_c_40_58 | 53094 | 54878 | + | 3.A.1.106.14 |
| TC | Rep_1201_c_40 | Rep_1201_c_40_59 | 54884 | 56815 | + | 3.A.1.106.3 |
Gene ID: Rep_1201_c_40_55
Type: CAZyme
Location: 49725 - 50909 (-)
Type: CAZyme
Location: 49725 - 50909 (-)
Gene ID: Rep_1201_c_40_56
Type: pfam
Location: 50919 - 52385 (-)
Type: pfam
Location: 50919 - 52385 (-)
Gene ID: Rep_1201_c_40_57
Type:
Location: 52429 - 53010 (-)
Type:
Location: 52429 - 53010 (-)
Gene ID: Rep_1201_c_40_58
Type: TC
Location: 53094 - 54878 (+)
Type: TC
Location: 53094 - 54878 (+)
Gene ID: Rep_1201_c_40_59
Type: TC
Location: 54884 - 56815 (+)
Type: TC
Location: 54884 - 56815 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RFN20
Family
CAG-826
Genus
CALVUG01
Species
CALVUG01 sp944351395
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.