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Cluster: Rep_1193_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1193_c_1 Rep_1193_c_1_57 48308 50710 + 2.A.63.1.2
TC Rep_1193_c_1 Rep_1193_c_1_58 50697 51122 + 2.A.63.1.2
TC Rep_1193_c_1 Rep_1193_c_1_59 51119 51466 + 2.A.63.1.3
TC Rep_1193_c_1 Rep_1193_c_1_60 51456 52955 + 2.A.63.1.3
TC Rep_1193_c_1 Rep_1193_c_1_61 52952 53434 + 2.A.63.1.2
pfam Rep_1193_c_1 Rep_1193_c_1_62 53431 53733 + MrpF_PhaF
pfam Rep_1193_c_1 Rep_1193_c_1_63 53708 54208 + PhaG_MnhG_YufB
TC Rep_1193_c_1 Rep_1193_c_1_64 54402 56441 + 2.A.36.3.1
TF Rep_1193_c_1 Rep_1193_c_1_65 56624 57271 + Fe_dep_repress
pfam Rep_1193_c_1 Rep_1193_c_1_66 57313 58056 - Peptidase_M50B
CAZyme Rep_1193_c_1 Rep_1193_c_1_67 58235 58993 + GT26
TC Rep_1193_c_1 Rep_1193_c_1_68 59041 59835 - 3.A.1.104.2
TC Rep_1193_c_1 Rep_1193_c_1_69 60117 60962 + 3.A.1.104.2
pfam Rep_1193_c_1 Rep_1193_c_1_70 61185 62279 + Glyphos_transf
CAZyme Rep_1193_c_1 Rep_1193_c_1_71 62276 63340 + GT2
pfam Rep_1193_c_1 Rep_1193_c_1_72 63446 63844 + CTP_transf_like
TC Rep_1193_c_1 Rep_1193_c_1_73 64139 65866 + 3.A.1.123.2
CAZyme Rep_1193_c_1 Rep_1193_c_1_74 66021 68192 + GT2
TC Rep_1193_c_1 Rep_1193_c_1_75 68475 69707 + 2.A.41.1.3
TC Rep_1193_c_1 Rep_1193_c_1_76 70222 71055 + 2.A.115.1.2
TC Rep_1193_c_1 Rep_1193_c_1_77 71241 72032 + 3.A.1.14.7
pfam Rep_1193_c_1 Rep_1193_c_1_78 72251 72634 + EIIA-man
NULL(UNKNOWN) Rep_1193_c_1 Rep_1193_c_1_79 72750 73253 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1193_c_1 Rep_1193_c_1_80 73522 74589 + 2.A.120.1.8
Gene ID: Rep_1193_c_1_57
Type: TC
Location: 48308 - 50710 (+)
Gene ID: Rep_1193_c_1_58
Type: TC
Location: 50697 - 51122 (+)
Gene ID: Rep_1193_c_1_59
Type: TC
Location: 51119 - 51466 (+)
Gene ID: Rep_1193_c_1_60
Type: TC
Location: 51456 - 52955 (+)
Gene ID: Rep_1193_c_1_61
Type: TC
Location: 52952 - 53434 (+)
Gene ID: Rep_1193_c_1_62
Type: pfam
Location: 53431 - 53733 (+)
Gene ID: Rep_1193_c_1_63
Type: pfam
Location: 53708 - 54208 (+)
Gene ID: Rep_1193_c_1_64
Type: TC
Location: 54402 - 56441 (+)
Gene ID: Rep_1193_c_1_65
Type: TF
Location: 56624 - 57271 (+)
Gene ID: Rep_1193_c_1_66
Type: pfam
Location: 57313 - 58056 (-)
Gene ID: Rep_1193_c_1_67
Type: CAZyme
Location: 58235 - 58993 (+)
Gene ID: Rep_1193_c_1_68
Type: TC
Location: 59041 - 59835 (-)
Gene ID: Rep_1193_c_1_69
Type: TC
Location: 60117 - 60962 (+)
Gene ID: Rep_1193_c_1_70
Type: pfam
Location: 61185 - 62279 (+)
Gene ID: Rep_1193_c_1_71
Type: CAZyme
Location: 62276 - 63340 (+)
Gene ID: Rep_1193_c_1_72
Type: pfam
Location: 63446 - 63844 (+)
Gene ID: Rep_1193_c_1_73
Type: TC
Location: 64139 - 65866 (+)
Gene ID: Rep_1193_c_1_74
Type: CAZyme
Location: 66021 - 68192 (+)
Gene ID: Rep_1193_c_1_75
Type: TC
Location: 68475 - 69707 (+)
Gene ID: Rep_1193_c_1_76
Type: TC
Location: 70222 - 71055 (+)
Gene ID: Rep_1193_c_1_77
Type: TC
Location: 71241 - 72032 (+)
Gene ID: Rep_1193_c_1_78
Type: pfam
Location: 72251 - 72634 (+)
Gene ID: Rep_1193_c_1_79
Type:
Location: 72750 - 73253 (+)
Gene ID: Rep_1193_c_1_80
Type: TC
Location: 73522 - 74589 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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