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Cluster: Rep_1193_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1193_c_20 Rep_1193_c_20_3 3744 4598 + 2.A.108.2.3
pfam Rep_1193_c_20 Rep_1193_c_20_4 4595 5821 + Dyp_perox_N | Dyp_perox_C
TC Rep_1193_c_20 Rep_1193_c_20_5 5802 7532 + 2.A.108.2.5
TC Rep_1193_c_20 Rep_1193_c_20_6 7602 8225 - 2.A.64.3.2
TC Rep_1193_c_20 Rep_1193_c_20_7 8299 8523 - 2.A.64.3.2
pfam Rep_1193_c_20 Rep_1193_c_20_8 8700 9215 + Acetyltransf_1 | Acetyltransf_4 | Acetyltransf_7 | Acetyltransf_10
pfam Rep_1193_c_20 Rep_1193_c_20_9 9271 10956 - Glyphos_transf
TC Rep_1193_c_20 Rep_1193_c_20_10 11312 12913 + 2.A.14.1.1
CAZyme Rep_1193_c_20 Rep_1193_c_20_11 12963 14108 - GT4
Gene ID: Rep_1193_c_20_3
Type: TC
Location: 3744 - 4598 (+)
Gene ID: Rep_1193_c_20_4
Type: pfam
Location: 4595 - 5821 (+)
Gene ID: Rep_1193_c_20_5
Type: TC
Location: 5802 - 7532 (+)
Gene ID: Rep_1193_c_20_6
Type: TC
Location: 7602 - 8225 (-)
Gene ID: Rep_1193_c_20_7
Type: TC
Location: 8299 - 8523 (-)
Gene ID: Rep_1193_c_20_8
Type: pfam
Location: 8700 - 9215 (+)
Gene ID: Rep_1193_c_20_9
Type: pfam
Location: 9271 - 10956 (-)
Gene ID: Rep_1193_c_20_10
Type: TC
Location: 11312 - 12913 (+)
Gene ID: Rep_1193_c_20_11
Type: CAZyme
Location: 12963 - 14108 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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