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Cluster: Rep_1193_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1193_c_13 Rep_1193_c_13_14 14233 16170 - 3.A.1.121.4
TF Rep_1193_c_13 Rep_1193_c_13_15 16416 17054 + 0045030
TC Rep_1193_c_13 Rep_1193_c_13_16 17195 18286 + 9.B.102.1.2
TC Rep_1193_c_13 Rep_1193_c_13_17 18304 18528 + 9.B.102.1.12
TC Rep_1193_c_13 Rep_1193_c_13_18 18638 19882 + 1.A.11.1.5
CAZyme Rep_1193_c_13 Rep_1193_c_13_19 20137 21624 + GH32
STP Rep_1193_c_13 Rep_1193_c_13_20 21625 22584 + PfkB
TF Rep_1193_c_13 Rep_1193_c_13_21 22635 23351 - LytTR
TC Rep_1193_c_13 Rep_1193_c_13_22 23364 24653 - 9.B.14.1.13
pfam Rep_1193_c_13 Rep_1193_c_13_23 24677 24817 - AgrD
TC Rep_1193_c_13 Rep_1193_c_13_24 24820 25386 - 9.B.46.1.1
Gene ID: Rep_1193_c_13_14
Type: TC
Location: 14233 - 16170 (-)
Gene ID: Rep_1193_c_13_15
Type: TF
Location: 16416 - 17054 (+)
Gene ID: Rep_1193_c_13_16
Type: TC
Location: 17195 - 18286 (+)
Gene ID: Rep_1193_c_13_17
Type: TC
Location: 18304 - 18528 (+)
Gene ID: Rep_1193_c_13_18
Type: TC
Location: 18638 - 19882 (+)
Gene ID: Rep_1193_c_13_19
Type: CAZyme
Location: 20137 - 21624 (+)
Gene ID: Rep_1193_c_13_20
Type: STP
Location: 21625 - 22584 (+)
Gene ID: Rep_1193_c_13_21
Type: TF
Location: 22635 - 23351 (-)
Gene ID: Rep_1193_c_13_22
Type: TC
Location: 23364 - 24653 (-)
Gene ID: Rep_1193_c_13_23
Type: pfam
Location: 24677 - 24817 (-)
Gene ID: Rep_1193_c_13_24
Type: TC
Location: 24820 - 25386 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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