dbCAN Logo

Cluster: Rep_1193_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1193_c_10 Rep_1193_c_10_55 45979 46863 - CBM50
pfam Rep_1193_c_10 Rep_1193_c_10_56 47084 48079 - RF-1 | PCRF
TC Rep_1193_c_10 Rep_1193_c_10_57 48312 50849 - 3.A.5.1.1
pfam Rep_1193_c_10 Rep_1193_c_10_58 51282 51887 - Ribosomal_S30AE | Ribosom_S30AE_C
TC Rep_1193_c_10 Rep_1193_c_10_59 51949 52626 - 3.A.11.1.4
TC Rep_1193_c_10 Rep_1193_c_10_60 52619 53701 - 3.A.11.1.4
pfam Rep_1193_c_10 Rep_1193_c_10_61 54008 54874 - DegV
pfam Rep_1193_c_10 Rep_1193_c_10_62 55015 55656 + UPF0029 | DUF1949
TC Rep_1193_c_10 Rep_1193_c_10_63 55721 56794 - 9.B.146.1.1
TC Rep_1193_c_10 Rep_1193_c_10_64 57167 58237 + 9.B.34.1.2
TC Rep_1193_c_10 Rep_1193_c_10_65 58445 59206 + 2.A.79.1.4
TC Rep_1193_c_10 Rep_1193_c_10_66 59223 59717 + 2.A.79.1.7
Gene ID: Rep_1193_c_10_55
Type: CAZyme
Location: 45979 - 46863 (-)
Gene ID: Rep_1193_c_10_56
Type: pfam
Location: 47084 - 48079 (-)
Gene ID: Rep_1193_c_10_57
Type: TC
Location: 48312 - 50849 (-)
Gene ID: Rep_1193_c_10_58
Type: pfam
Location: 51282 - 51887 (-)
Gene ID: Rep_1193_c_10_59
Type: TC
Location: 51949 - 52626 (-)
Gene ID: Rep_1193_c_10_60
Type: TC
Location: 52619 - 53701 (-)
Gene ID: Rep_1193_c_10_61
Type: pfam
Location: 54008 - 54874 (-)
Gene ID: Rep_1193_c_10_62
Type: pfam
Location: 55015 - 55656 (+)
Gene ID: Rep_1193_c_10_63
Type: TC
Location: 55721 - 56794 (-)
Gene ID: Rep_1193_c_10_64
Type: TC
Location: 57167 - 58237 (+)
Gene ID: Rep_1193_c_10_65
Type: TC
Location: 58445 - 59206 (+)
Gene ID: Rep_1193_c_10_66
Type: TC
Location: 59223 - 59717 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List