Cluster: Rep_1191_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1191
- CGC Family ID: CGCFAM_04123
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1191_c_65 | Rep_1191_c_65_47 | 28165 | 28773 | + | 9.B.105.2.2 |
| CAZyme | Rep_1191_c_65 | Rep_1191_c_65_48 | 28786 | 29886 | + | GT28 |
| pfam | Rep_1191_c_65 | Rep_1191_c_65_49 | 30210 | 31007 | + | PseudoU_synth_1 | PseudoU_synth_1 |
| TC | Rep_1191_c_65 | Rep_1191_c_65_50 | 31325 | 32146 | + | 3.A.1.26.7 |
| TC | Rep_1191_c_65 | Rep_1191_c_65_51 | 32131 | 33018 | + | 3.A.1.26.7 |
| TC | Rep_1191_c_65 | Rep_1191_c_65_52 | 33011 | 33799 | + | 3.A.1.25.4 |
| pfam | Rep_1191_c_65 | Rep_1191_c_65_53 | 33825 | 34856 | + | Sua5_yciO_yrdC | Sua5_C |
| CAZyme | Rep_1191_c_65 | Rep_1191_c_65_54 | 34872 | 35834 | + | GT2 |
| TC | Rep_1191_c_65 | Rep_1191_c_65_55 | 35841 | 37409 | + | 9.B.142.3.8 |
| sulfatase | Rep_1191_c_65 | Rep_1191_c_65_56 | 37390 | 38589 | + | S1_32 |
| pfam | Rep_1191_c_65 | Rep_1191_c_65_57 | 38928 | 40871 | + | tRNA-synt_2b | HGTP_anticodon | tRNA_SAD |
| TC | Rep_1191_c_65 | Rep_1191_c_65_58 | 41077 | 41661 | + | 3.D.1.8.1 |
Gene ID: Rep_1191_c_65_47
Type: TC
Location: 28165 - 28773 (+)
Type: TC
Location: 28165 - 28773 (+)
Gene ID: Rep_1191_c_65_48
Type: CAZyme
Location: 28786 - 29886 (+)
Type: CAZyme
Location: 28786 - 29886 (+)
Gene ID: Rep_1191_c_65_49
Type: pfam
Location: 30210 - 31007 (+)
Type: pfam
Location: 30210 - 31007 (+)
Gene ID: Rep_1191_c_65_50
Type: TC
Location: 31325 - 32146 (+)
Type: TC
Location: 31325 - 32146 (+)
Gene ID: Rep_1191_c_65_51
Type: TC
Location: 32131 - 33018 (+)
Type: TC
Location: 32131 - 33018 (+)
Gene ID: Rep_1191_c_65_52
Type: TC
Location: 33011 - 33799 (+)
Type: TC
Location: 33011 - 33799 (+)
Gene ID: Rep_1191_c_65_53
Type: pfam
Location: 33825 - 34856 (+)
Type: pfam
Location: 33825 - 34856 (+)
Gene ID: Rep_1191_c_65_54
Type: CAZyme
Location: 34872 - 35834 (+)
Type: CAZyme
Location: 34872 - 35834 (+)
Gene ID: Rep_1191_c_65_55
Type: TC
Location: 35841 - 37409 (+)
Type: TC
Location: 35841 - 37409 (+)
Gene ID: Rep_1191_c_65_56
Type: sulfatase
Location: 37390 - 38589 (+)
Type: sulfatase
Location: 37390 - 38589 (+)
Gene ID: Rep_1191_c_65_57
Type: pfam
Location: 38928 - 40871 (+)
Type: pfam
Location: 38928 - 40871 (+)
Gene ID: Rep_1191_c_65_58
Type: TC
Location: 41077 - 41661 (+)
Type: TC
Location: 41077 - 41661 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Gemellaceae
Genus
Gemella
Species
Gemella sp900766305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.