Cluster: Rep_1191_CGC11
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_1191
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1191_c_62 | Rep_1191_c_62_33 | 38425 | 39915 | + | GH77 |
| CAZyme | Rep_1191_c_62 | Rep_1191_c_62_34 | 39917 | 42175 | + | GT35 |
| pfam | Rep_1191_c_62 | Rep_1191_c_62_35 | 42201 | 42995 | + | Exo_endo_phos |
| TC | Rep_1191_c_62 | Rep_1191_c_62_36 | 43014 | 44600 | + | 4.A.1.1.16 |
| TC | Rep_1191_c_62 | Rep_1191_c_62_37 | 44850 | 45683 | - | 3.A.1.24.5 |
| TC | Rep_1191_c_62 | Rep_1191_c_62_38 | 45779 | 46603 | - | 3.A.1.24.5 |
| TC | Rep_1191_c_62 | Rep_1191_c_62_39 | 46608 | 47279 | - | 3.A.1.24.5 |
| TC | Rep_1191_c_62 | Rep_1191_c_62_40 | 47272 | 48006 | - | 3.A.1.24.2 |
| TF | Rep_1191_c_62 | Rep_1191_c_62_41 | 48438 | 49451 | + | LacI |
| pfam | Rep_1191_c_62 | Rep_1191_c_62_42 | 49444 | 50241 | + | S6PP | Hydrolase_3 |
| TC | Rep_1191_c_62 | Rep_1191_c_62_43 | 50287 | 51810 | - | 2.A.49.5.5 |
| STP | Rep_1191_c_62 | Rep_1191_c_62_44 | 51955 | 52680 | + | Rhodanese |
| CAZyme | Rep_1191_c_62 | Rep_1191_c_62_45 | 52937 | 54139 | + | GT4 |
| sulfatase | Rep_1191_c_62 | Rep_1191_c_62_46 | 54340 | 56979 | + | S1_2 |
| pfam | Rep_1191_c_62 | Rep_1191_c_62_47 | 57204 | 58463 | + | ELFV_dehydrog | ELFV_dehydrog_N |
| CAZyme | Rep_1191_c_62 | Rep_1191_c_62_48 | 58519 | 59346 | - | CE7 |
| CAZyme | Rep_1191_c_62 | Rep_1191_c_62_49 | 59356 | 60282 | - | CE7 |
| TC | Rep_1191_c_62 | Rep_1191_c_62_50 | 60506 | 61807 | + | 9.A.40.2.1 |
Gene ID: Rep_1191_c_62_33
Type: CAZyme
Location: 38425 - 39915 (+)
Type: CAZyme
Location: 38425 - 39915 (+)
Gene ID: Rep_1191_c_62_34
Type: CAZyme
Location: 39917 - 42175 (+)
Type: CAZyme
Location: 39917 - 42175 (+)
Gene ID: Rep_1191_c_62_35
Type: pfam
Location: 42201 - 42995 (+)
Type: pfam
Location: 42201 - 42995 (+)
Gene ID: Rep_1191_c_62_36
Type: TC
Location: 43014 - 44600 (+)
Type: TC
Location: 43014 - 44600 (+)
Gene ID: Rep_1191_c_62_37
Type: TC
Location: 44850 - 45683 (-)
Type: TC
Location: 44850 - 45683 (-)
Gene ID: Rep_1191_c_62_38
Type: TC
Location: 45779 - 46603 (-)
Type: TC
Location: 45779 - 46603 (-)
Gene ID: Rep_1191_c_62_39
Type: TC
Location: 46608 - 47279 (-)
Type: TC
Location: 46608 - 47279 (-)
Gene ID: Rep_1191_c_62_40
Type: TC
Location: 47272 - 48006 (-)
Type: TC
Location: 47272 - 48006 (-)
Gene ID: Rep_1191_c_62_41
Type: TF
Location: 48438 - 49451 (+)
Type: TF
Location: 48438 - 49451 (+)
Gene ID: Rep_1191_c_62_42
Type: pfam
Location: 49444 - 50241 (+)
Type: pfam
Location: 49444 - 50241 (+)
Gene ID: Rep_1191_c_62_43
Type: TC
Location: 50287 - 51810 (-)
Type: TC
Location: 50287 - 51810 (-)
Gene ID: Rep_1191_c_62_44
Type: STP
Location: 51955 - 52680 (+)
Type: STP
Location: 51955 - 52680 (+)
Gene ID: Rep_1191_c_62_45
Type: CAZyme
Location: 52937 - 54139 (+)
Type: CAZyme
Location: 52937 - 54139 (+)
Gene ID: Rep_1191_c_62_46
Type: sulfatase
Location: 54340 - 56979 (+)
Type: sulfatase
Location: 54340 - 56979 (+)
Gene ID: Rep_1191_c_62_47
Type: pfam
Location: 57204 - 58463 (+)
Type: pfam
Location: 57204 - 58463 (+)
Gene ID: Rep_1191_c_62_48
Type: CAZyme
Location: 58519 - 59346 (-)
Type: CAZyme
Location: 58519 - 59346 (-)
Gene ID: Rep_1191_c_62_49
Type: CAZyme
Location: 59356 - 60282 (-)
Type: CAZyme
Location: 59356 - 60282 (-)
Gene ID: Rep_1191_c_62_50
Type: TC
Location: 60506 - 61807 (+)
Type: TC
Location: 60506 - 61807 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Gemellaceae
Genus
Gemella
Species
Gemella sp900766305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.